Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D02
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc...    48   1e-06
U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac...    48   1e-06
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac...    48   1e-06
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
            transferase protein.
          Length = 1151

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 1    GEPNLQSTAHQLGLPPGRIIFSNVAAKEEHVRRG 102
            GE +++    + GL P RI+FSNVAAKEEHVRRG
Sbjct: 987  GEEHIRKYCVERGLDPSRIVFSNVAAKEEHVRRG 1020


>U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac
           transferase protein1, isoform b protein.
          Length = 973

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 1   GEPNLQSTAHQLGLPPGRIIFSNVAAKEEHVRRG 102
           GE +++    + GL P RI+FSNVAAKEEHVRRG
Sbjct: 809 GEEHIRKYCVERGLDPSRIVFSNVAAKEEHVRRG 842


>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
            transferase protein1, isoform a protein.
          Length = 1151

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +1

Query: 1    GEPNLQSTAHQLGLPPGRIIFSNVAAKEEHVRRG 102
            GE +++    + GL P RI+FSNVAAKEEHVRRG
Sbjct: 987  GEEHIRKYCVERGLDPSRIVFSNVAAKEEHVRRG 1020


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 102 TAAHVLFLRRHIREYYTSRWETQLMSRG 19
           TAA VL+  RH    Y  R+  +L   G
Sbjct: 226 TAAAVLYANRHYLRLYKRRYAARLCKNG 253


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 102 TAAHVLFLRRHIREYYTSRWETQLMSRG 19
           TAA VL+  RH    Y  R+  +L   G
Sbjct: 233 TAAAVLYANRHYLRLYKRRYAARLCKNG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,429
Number of Sequences: 27780
Number of extensions: 35139
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)