Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D02
         (102 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    34   0.011
At5g35180.1 68418.m04169 expressed protein                             26   2.9  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    26   3.9  
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc...    25   5.1  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    25   5.1  

>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
           putative similar to O-GlcNAc transferase, Homo sapiens
           [SP|O15294], Rattus norvegicus [SP|P56558]; contains
           Pfam profile PF00515: TPR Domain; identical to cDNA
           GI:18139886
          Length = 977

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 1   GEPNLQSTAHQLGLPPGRIIFSNVAAKEEHVRR 99
           GE   ++ A   G+ P +IIF++VA K EH+RR
Sbjct: 809 GEMRFRTYAAAQGVQPDQIIFTDVAMKSEHIRR 841


>At5g35180.1 68418.m04169 expressed protein
          Length = 778

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 11  IYNPRLIN-WVSHRDV*YSRMWRR 79
           IY+P+ ++ W S RD  +SR W R
Sbjct: 325 IYDPKYLSRWQSKRDFVFSRQWVR 348


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
          PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 91 RALPSPPHSRILYVPVGDPIDEPWIVN 11
          R  P PP SRI  +P  D   EP I++
Sbjct: 6  RVAPKPPKSRIRELPSRDRFAEPKILD 32


>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 387

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  GSSIGSPTGTYNILECGGEGRARA 95
           G+S G PT    I++CG   + RA
Sbjct: 157 GTSDGKPTSPVKIIDCGETSQIRA 180


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  GSSIGSPTGTYNILECGGEGRARA 95
           G+S G PT    I++CG   + RA
Sbjct: 157 GTSDGKPTSPVKIIDCGETSQIRA 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,018
Number of Sequences: 28952
Number of extensions: 32023
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,070,560
effective HSP length: 15
effective length of database: 11,636,280
effective search space used: 209453040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)