Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D01
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1341 - 36434098-36436080                                         32   0.31 
11_04_0320 + 16354122-16354226,16354652-16356859                       29   2.2  
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411           27   6.6  
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067           27   8.8  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   8.8  

>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +3

Query: 150 IVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 329
           I++G     A +   L N GRGEVIR+  N  L E   +V  +  K   + EI IVRD  
Sbjct: 588 ILLGHSEKLA-VAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAER-EI-IVRDVN 644

Query: 330 PIH 338
             H
Sbjct: 645 RFH 647


>11_04_0320 + 16354122-16354226,16354652-16356859
          Length = 770

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +3

Query: 174 AARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWIL 353
           AA   +ELK +G  E   L++N  ++  +   V    KL+++ ++GI+RD       WI 
Sbjct: 584 AADKLLELKPKGI-ETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDR-----SWIT 637

Query: 354 LGEQVKFINLRD 389
           + ++V F    D
Sbjct: 638 IKDKVYFFRAND 649


>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
          Length = 1311

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 168 VSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPI 335
           V+  RI+ E + +G  E +  VV+ L     RNVV       RKGE+ +V DY P+
Sbjct: 379 VAVKRISHESR-QGMKEFVAEVVS-LGRLRHRNVVQLLDYCRRKGELLLVYDYMPM 432


>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
          Length = 472

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 455 LVTVRTSIAISVCTPFEFKSICISEIDKLYLF 360
           +V + +  A S+  PF++ SIC+   D+L+ F
Sbjct: 203 VVRLLSEFADSLELPFQYNSICVHNEDELHAF 234


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 369 LLVHPIKSSENVLGSNHGLCRFH 301
           ++V PIK +E V G+  G CR H
Sbjct: 452 IMVMPIKPNERVWGALLGACRIH 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,490
Number of Sequences: 37544
Number of extensions: 223897
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)