Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D01
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    27   0.15 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.60 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 179 CRGDISAYYDVIVQFVIFQ*CTSIFLRYRRSLYNQQSQH---CDGQNHLIRLDPG 24
           C  D+S ++D + Q VI+  C  +  R  R L N  +      DG N +++   G
Sbjct: 132 CDVDVSTFFDQLGQEVIYTACVGLLERAFRCLGNNLTAFLTTLDGVNDVVQHQSG 186


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 369 KFINLRDANALKLEWGTDRDGDRGAYGDQNEWESD 473
           +++ L +   + LEWG    GD       +EW+SD
Sbjct: 173 QYLRLLEVPQINLEWGEGSSGD----DLSSEWDSD 203


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 381 LRDANALKLEWGTDRDGDRGAYGDQNEWESD 473
           LRD N + L      DG  G  GD++   +D
Sbjct: 183 LRDINDIGLNRRDSDDGSDGNDGDESSCRAD 213


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 509 VPPMRDYFPRHSITLPFVLVTVRTSIAISVC 417
           +PP     P     L F ++ V  SI I+VC
Sbjct: 302 IPPTSLAIPLLGKYLLFTMILVTLSIWITVC 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,567
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)