Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_D01
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61350.1 68418.m07698 protein kinase family protein contains ...    29   1.8  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    29   1.8  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    27   9.7  
At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    27   9.7  

>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +3

Query: 225 RLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWILLGEQVKFINLRDANALK 404
           R V+N  L   + N+ +YA  L RKG +  + D  P     I  G   KF+    A    
Sbjct: 728 RPVINPQLPREQVNLAEYAMNLHRKGMLEKIID--PKIVGTISKGSLRKFVEA--AEKCL 783

Query: 405 LEWGTDRDG 431
            E+G DR G
Sbjct: 784 AEYGVDRPG 792


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 225 RLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 329
           R V++  L   K N++++A KLV+KG++  + D F
Sbjct: 686 RPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPF 720


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 177 ARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYA----YKLVRKG 302
           A    +L  +GR E + L+   L AES  NV  +A    Y L+ KG
Sbjct: 85  ADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKG 130


>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 435 RGAYGDQNEWESDRMSWKIIPHW 503
           +G YGD NEWE    + K+   W
Sbjct: 204 QGRYGDVNEWEEKAPNAKMAHPW 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,279
Number of Sequences: 28952
Number of extensions: 190158
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)