Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C24
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                36   0.027
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   2.3  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   3.1  
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)                 28   5.4  
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_40068| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   9.5  
SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)                     27   9.5  

>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 368  ETTYMTSVVTWMSRSCALTAFRYSMTTSMVFVWSTQTASVPRVRVQF 228
            E  Y+T+   + ++  A+  FRYS     V +W+ +  S P  RV+F
Sbjct: 1283 EIKYLTTTKYYDTQGVAVRHFRYSFVAQQVMIWTVEHLSSPCFRVEF 1329


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +3

Query: 132 DDEPLWLFKDNNE---PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTI 302
           D +  W F D N+   P+ PS      LPS   D      T   R + +   +   SH +
Sbjct: 589 DKDSGWSFSDGNQQNAPKEPSQEQTSQLPSDPSDKYSVFKTAGDRQMESNENFKDWSHMV 648

Query: 303 SKSSQSTGPTHPGYN 347
              SQ+     PG++
Sbjct: 649 RLGSQAVQNMVPGFH 663


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +3

Query: 72  PTYRPRPTVGPVTMRAKRSA---DDEPLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPN 242
           PT RP+P   PVT+R K        +P   ++ +    +     +P L ++   +    +
Sbjct: 441 PTPRPKP---PVTLRNKSVPGPNQKQPAQPYRHSMV--SERFAGNPFLSNLEKQLDAASD 495

Query: 243 TRYARSLSTPNKYHGGSHTISKSSQST 323
            + +RSL  P  +  G H I+ SS+S+
Sbjct: 496 IKKSRSLDRPANFAQGVHDITNSSESS 522


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 171 PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 347
           P +PS+G  P  PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 442 PSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 499


>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
          Length = 773

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 61  LLFILHIVHGPQSAL*LCGLNEARMMNLYGCSKTTTSPVHRLLEI 195
           L F +  V+GP+ +  + G   + +   YG   TT  PVH LL++
Sbjct: 80  LAFTIWDVYGPRKSTPVGGTTVS-LFGKYGSETTTKRPVHCLLKV 123


>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 208 GSTG*SPVDGARGSLLSLNSHRGSSSALRLARI 110
           GSTG +   G++ S  S +S  GSS+AL   R+
Sbjct: 464 GSTGGASSSGSKSSSSSASSQSGSSAALMSRRV 496


>SB_40068| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 406

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 RSLSTPNKYHGGSHTISKSSQST 323
           R  + PN+ H  S +ISKS+QST
Sbjct: 20  RRSTLPNRDHSSSGSISKSTQST 42


>SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)
          Length = 408

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 120 KRSADDEPLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHT 299
           +  A+D      +D   P +PS    P  P   DD ++       +++   NK  GGS T
Sbjct: 175 RHEAEDPEDIEMQDAPCPSSPSLFPEPTSPLCDDDTEVGVKKENQKTVVKRNKTFGGSTT 234

Query: 300 ISKSSQSTGPT 332
            S   ++T PT
Sbjct: 235 RSLFRKTT-PT 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,308,888
Number of Sequences: 59808
Number of extensions: 353823
Number of successful extensions: 945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)