Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C24
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote...    29   1.4  
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote...    29   1.4  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    29   1.4  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    29   1.4  
At5g09640.1 68418.m01115 sinapoylglucose:choline sinapoyltransfe...    28   4.4  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   4.4  
At1g65270.3 68414.m07401 expressed protein                             27   5.8  
At1g65270.2 68414.m07400 expressed protein                             27   5.8  
At1g65270.1 68414.m07399 expressed protein                             27   5.8  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    27   5.8  

>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 90  PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 179
           PT  P TM  + S+  D EP W F D  EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189


>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 90  PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 179
           PT  P TM  + S+  D EP W F D  EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 159 DNNEPRAPSTGDHPVLPSIIDDIKLNPN-TR----YARSLSTPNKYHGGS 293
           DNN P +P        P  ID ++L+PN TR    YA  +ST + +  G+
Sbjct: 595 DNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSFSDGA 644


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 153 FKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 251
           F DN + +AP   +H +   I D++ L+PN +Y
Sbjct: 239 FSDNIQYQAPVDFNHQIQHGIYDNLSLDPNHQY 271


>At5g09640.1 68418.m01115 sinapoylglucose:choline
           sinapoyltransferase (SNG2) GC donor splice site at exon
           11 and 13; TA donor splice site at exon 10; similar to
           serine carboxypeptidase I precursor (SP:P37890) [Oryza
           sativa]; wound-inducible carboxypeptidase, Lycopersicon
           esculentum, EMBL:AF242849; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:choline sinapoyltransferase (SNG2)
           GI:15418806
          Length = 465

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 406 RRLVVARTPANSSRLQPP*CLVYEYFIS 489
           RR++   +  +SS L PP C  Y YF+S
Sbjct: 301 RRVMKEFSVNDSSSLPPPSCFTYRYFLS 328


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 171  PRAPSTGDHPVLPSII-DDIKLNPNTRYARS---LSTPNKYHGGSHTISKSSQSTGPTHP 338
            P +PS G  P  PS      K +P+  Y+ S   LS  + Y   S   S +S S  PT P
Sbjct: 1715 PTSPSYG--PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP 1772

Query: 339  GYN 347
             Y+
Sbjct: 1773 SYS 1775


>At1g65270.3 68414.m07401 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 RYARSLSTPNKYHGGSHTISKSSQSTGPT 332
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.2 68414.m07400 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 RYARSLSTPNKYHGGSHTISKSSQSTGPT 332
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.1 68414.m07399 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 RYARSLSTPNKYHGGSHTISKSSQSTGPT 332
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +3

Query: 141 PLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 251
           P+W+F  + +   P  G   ++  + DD+  N    Y
Sbjct: 380 PVWVFSGDEDSVIPLLGSRTLVKELADDLNFNTTVPY 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,337
Number of Sequences: 28952
Number of extensions: 218717
Number of successful extensions: 571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)