Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C22
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   5.1  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   6.8  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   6.8  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   6.8  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   8.9  
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)                     27   8.9  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 318 FKIAYLY--ETFTSHHGREGCRI-AWVD 244
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 VDFNHPNYPPKRYD 263
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQ 167
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186


>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 173

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 119 AVRWNTTIVHHVNSVCGSHGQY 54
           A RW T   H+   +CG HG+Y
Sbjct: 55  ATRWTTN--HNCYHICGHHGRY 74


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQ 167
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 90  VDSSGVAGDQRSSLLVSATLNPLFSQ 115


>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 260
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP  Y
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 129 GHYCRPMEHHYCPPRELCLR 70
           GH C+P     CPP   C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,289
Number of Sequences: 59808
Number of extensions: 253653
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)