Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C21
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   3.2  
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)                   27   9.7  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            27   9.7  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 407  TGYYPLMT-SYYFPF--AQRPDNYNLHSVXNYEAIRFLDIFEKTFVQSLQNGKFESYGKK 577
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 578  IDFHD 592
             D H+
Sbjct: 4771 RDVHE 4775


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 282 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 407
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -1

Query: 599 PFHRGNQFSCHTIRICRSVGTVRKSFQKCPRTVLL-RSSXRCVDC 468
           P H  NQ  C    IC   G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 92   AINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSER 271
            A+ + I ++   Y+YYA     + YNN    LTY+      N+  + + + L     ++ 
Sbjct: 822  ALKWAITEKFRDYLYYAPSFTVYTYNNP---LTYILTTAKLNATGHRWVAEL-----ADY 873

Query: 272  YGNLKHRRGEIY 307
               +K+R G IY
Sbjct: 874  NFTIKYRPGRIY 885


>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
          Length = 316

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 154 VGIVGVIHILLFLFYNSIINSLCIVKNTV 68
           VG + + +ILLF     +I ++C+V NTV
Sbjct: 168 VGFLALNNILLFKVVGCVIITICLVLNTV 196


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = +2

Query: 185 LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 352
           + Y  E + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 29  VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,444
Number of Sequences: 59808
Number of extensions: 393040
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)