Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C20
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    29   0.58 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   2.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   3.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   7.1  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.1  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 138 FRLGVKDWLALVPPTVV--VGGISYYSYQTIKKARISGSGQINPIIRKDIKKVVDFIDI 308
           +R G+  W  L+P   +  +   SYY ++  ++  + G+  INP+   ++ K +D I +
Sbjct: 247 WRWGIAVWTILIPACSIPFLAVYSYYQFRAWREGALKGTLTINPV---ELFKKLDIIGL 302


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 356 FASPTSTKHCLLCNILNINKIYH 288
           F  P  +KHC LCNI  + K  H
Sbjct: 165 FEKPARSKHCRLCNIC-VEKFDH 186


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 252 DHYQKFVLS*WSGKSNMKYHPQQQWGEPE 166
           D +++ V+   SGK      PQ+QW  PE
Sbjct: 115 DEFKEHVIEAVSGKCEFGLVPQEQWSIPE 143


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 420 ARYCLRSLYCGVREHRHNKANFCFSNIYK 334
           ARYCLR +Y    +   N  +F  S ++K
Sbjct: 537 ARYCLRCVYDDKMDSLWNSRSFWVSKVFK 565


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 385 DPTIERPETIPGLSSSGTNRLKVTETGSTQAST 483
           DP +E   +    ++SG+N ++  +T  T+++T
Sbjct: 223 DPVVEPTHSASNAANSGSNTIRARQTTRTRSNT 255


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 59  YYIEFGESYHS*LFGWSTNT*LNWRLVSTWSKRL 160
           + ++  + +HS  F W ++T L +R V +W  R+
Sbjct: 382 HLVKHSQIFHSYPFCWRSDTPLIYRAVPSWFVRV 415


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 475 PVLSLSQLPSAGLCLTTTGPVLSPVSLLWGP 383
           P  S+S LPS G   TT    L+  SLL  P
Sbjct: 306 PASSVSSLPSLGASQTTDSSSLNQSSLLRRP 336


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 114  IPDSIGGWFRLGVKDWL 164
            +P+SI   FR G+K W+
Sbjct: 1084 VPESINSLFRAGIKFWM 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,059
Number of Sequences: 5004
Number of extensions: 41597
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)