Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C20
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0307 - 16546692-16546791,16548107-16548336                       75   4e-14
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301...    29   1.8  
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866...    29   1.8  
03_01_0100 - 791425-792996                                             28   5.4  
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    27   7.2  
01_05_0148 + 18609853-18610058,18610347-18612669                       27   7.2  
10_06_0080 + 10441055-10443856                                         27   9.5  
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431...    27   9.5  

>07_03_0307 - 16546692-16546791,16548107-16548336
          Length = 109

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = +3

Query: 240 SGSGQINPIIRKDIKKVVDFIDIEDITEKAV-LCRCWRSKNWPYCDGAHGPHNRETGDNT 416
           +G G INP IRK+ +KVVD +   ++++     CRCWRS  +P CDG+H  HN+ TGDN 
Sbjct: 43  AGVGGINPSIRKEEEKVVDTVLAGELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 102

Query: 417 GPVVVR 434
           GP++V+
Sbjct: 103 GPLLVK 108


>08_01_0341 +
           3011238-3011246,3011824-3012192,3012412-3012505,
           3012594-3012631,3012862-3013008,3013912-3014011,
           3014615-3015042,3015234-3015389
          Length = 446

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 275 LPDYWIYLTTTRNSCFLDGLVRVI*NTTHNNSGGNQSQPIFYSKSKP 135
           LP Y         SC   G+ R +    + NSG   S+ +FY K +P
Sbjct: 77  LPSYLTVNVLKDQSCARQGIFRKVIVILNPNSGFRSSREVFYQKVQP 123


>04_04_0915 -
           29385926-29385952,29386069-29386285,29386367-29386622,
           29386745-29387072,29387157-29387587,29388014-29388163,
           29388212-29388398,29388709-29388750,29389007-29389555,
           29389778-29390032
          Length = 813

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 472 VLSLSQLPSAGLCLTTTGPVLSPVSLLWGP 383
           +L+ SQL +   C+  +  + SP+ L+WGP
Sbjct: 312 MLNNSQLNAVADCVLVSEKISSPIKLIWGP 341


>03_01_0100 - 791425-792996
          Length = 523

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 207 YSYQTIKKARISGSGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRS 353
           Y Y  + +    G G  NP+ RK  + V     +ED    +VL    R+
Sbjct: 54  YQYHEVPRFACDGGGAENPLFRKAAQYVAVLPSLEDADAASVLSSASRT 102


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 180 TVVVGGISYYSYQTIKKARISGSGQINPIIRKDIK 284
           T+ VGG+     +T  KAR++ +G++  +++ ++K
Sbjct: 249 TLTVGGLYKVDPETAVKARLNNTGKLAALLQHEVK 283


>01_05_0148 + 18609853-18610058,18610347-18612669
          Length = 842

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 314 ILNINKIYHLLNILPDYWIYLTTTRNSCFL 225
           ++N   + H+ NIL   +IYL T   SCFL
Sbjct: 317 LINNPSLEHVRNILYLSYIYLPTQLKSCFL 346


>10_06_0080 + 10441055-10443856
          Length = 933

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 314 ILNINKIYHLLNILPDYWIYLTTTRNSCFL 225
           ++N   + H+ NIL   +IYL T   SCFL
Sbjct: 409 LINNPSLEHVRNILYLSYIYLPTHLKSCFL 438


>01_06_0445 -
           29441472-29442152,29442244-29442357,29442959-29443186,
           29443284-29443586
          Length = 441

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 189 VGGISYYSYQTIKKARISGSGQINPIIRK 275
           VGG SY S     KAR+SG G   P +++
Sbjct: 353 VGGPSYMSLTKSAKARLSGYGSHKPPLQR 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,500
Number of Sequences: 37544
Number of extensions: 278986
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)