Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C20
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-18|CAO82066.1|  134|Caenorhabditis elegans Hypothetical p...    97   9e-21
Z66521-17|CAI46628.1|  103|Caenorhabditis elegans Hypothetical p...    97   9e-21
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    97   9e-21
Z34802-9|CAB54281.3|  160|Caenorhabditis elegans Hypothetical pr...    36   0.018
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    30   0.91 
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   0.91 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    30   0.91 
L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    30   1.2  
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U23147-6|AAC46690.2|  211|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    27   6.4  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     27   6.4  

>Z66521-18|CAO82066.1|  134|Caenorhabditis elegans Hypothetical
           protein W02B12.15b protein.
          Length = 134

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +3

Query: 246 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRETGDNTGPV 425
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN+ETGDN GP+
Sbjct: 68  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127

Query: 426 VVR 434
           +V+
Sbjct: 128 IVK 130


>Z66521-17|CAI46628.1|  103|Caenorhabditis elegans Hypothetical
           protein W02B12.15a protein.
          Length = 103

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +3

Query: 246 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRETGDNTGPV 425
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN+ETGDN GP+
Sbjct: 37  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 96

Query: 426 VVR 434
           +V+
Sbjct: 97  IVK 99


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +3

Query: 246 SGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAHGPHNRETGDNTGPV 425
           S + N  I+ D  K+VD +DIEDI EK   CRCW+S+ WPYCDG+HG HN+ETGDN GP+
Sbjct: 68  SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127

Query: 426 VVR 434
           +V+
Sbjct: 128 IVK 130


>Z34802-9|CAB54281.3|  160|Caenorhabditis elegans Hypothetical
           protein M88.7 protein.
          Length = 160

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 249 GQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCWRSKNWPYCDGAH 383
           G  N I   D+K K V FI  +D+T    LC C ++ N P+CDG+H
Sbjct: 103 GSHNSIRIPDLKLKPVRFIPDKDMT--VWLCNCKQTNNRPFCDGSH 146


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 391 TIERPETIPGLSSSGTNRLKVTETGSTQASTRDSS 495
           T+ RP T+ G +SSG+    VT  GST+AST  SS
Sbjct: 604 TVTRPSTVSGSTSSGST---VT-VGSTEASTSGSS 634


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 391 TIERPETIPGLSSSGTNRLKVTETGSTQASTRDSS 495
           T+ RP T+ G +SSG+    VT  GST+AST  SS
Sbjct: 811 TVTRPSTVSGSTSSGST---VT-VGSTEASTSGSS 841


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 391 TIERPETIPGLSSSGTNRLKVTETGSTQASTRDSS 495
           T+ RP T+ G +SSG+    VT  GST+AST  SS
Sbjct: 811 TVTRPSTVSGSTSSGST---VT-VGSTEASTSGSS 841



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 391  TIERPETIPGLSSSGTNRLKVTETGSTQASTRDSSEVFKSL 513
            T+ +P T+ G +SSG+    VT TGST+ S+   S    SL
Sbjct: 1216 TVTQPSTVRGSTSSGST---VT-TGSTEGSSTSGSSSATSL 1252


>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207 YSYQTIKKARISGSGQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCW 347
           Y   T+  A++  S  IN ++ K++  KV  F+D + +   A +CR W
Sbjct: 41  YLITTLSPAQVDNS-LINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207 YSYQTIKKARISGSGQINPIIRKDIK-KVVDFIDIEDITEKAVLCRCW 347
           Y   T+  A++  S  IN ++ K++  KV  F+D + +   A +CR W
Sbjct: 41  YLITTLSPAQVDNS-LINRVLPKEVLLKVFSFLDTKALCRSAQVCRSW 87


>U23147-6|AAC46690.2|  211|Caenorhabditis elegans Hypothetical
           protein C18H9.6 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 24/58 (41%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +1

Query: 370 VTVLTDPTIER------PETIPGLSSSGTNRLKVTETGSTQASTRDSSEVFKSLQQKY 525
           V VLTDP IER       E  PG SS  TN L         A    +S     LQQKY
Sbjct: 71  VMVLTDPKIERAYEYILEERDPGTSS--TNILVTVGVDDIAAFDGSASSYMHQLQQKY 126


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 96  YLAGLPIPDSIGGWFRLGVKDWLALV 173
           ++ GLPI   +GGW+ +G    +A V
Sbjct: 106 FIVGLPIAVKVGGWWSIGAMVGVAYV 131


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 96  YLAGLPIPDSIGGWFRLGVKDWLALV 173
           ++ GLPI   +GGW+ +G    +A V
Sbjct: 106 FIVGLPIAVKVGGWWSIGAMVGVAYV 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,704
Number of Sequences: 27780
Number of extensions: 236370
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)