Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C20
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 IPGLSSSGTNRLKVTETGSTQASTRDSSEVFKSL 513
           +P  SSS  N    +  G+T +S RDSS   +S+
Sbjct: 530 VPLTSSSNVNNN--SGNGNTNSSARDSSPAIESI 561


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)
 Frame = -2

Query: 483 GTCLC*ACLSYLQPVCA*RRQARYCLRSLYCGVREHRHNKANFC 352
           G   C  C  + +     + Q R C ++  C +     N+  +C
Sbjct: 80  GVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYC 123


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 296 IYHLLNILPDYWIYLTTTRNSCFLDGLVR 210
           ++H L  LP  + +LT    + F  G+++
Sbjct: 324 LFHALITLPTIFWFLTRQNPAAFFRGMMQ 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 194  THNNSGGNQSQPIFYSKSK 138
            THN +G NQ++  F + +K
Sbjct: 1574 THNVAGSNQAEFTFVTLTK 1592


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 194  THNNSGGNQSQPIFYSKSK 138
            THN +G NQ++  F + +K
Sbjct: 1570 THNVAGSNQAEFTFVTLTK 1588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,120
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)