Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C20
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51720.1 68418.m06414 expressed protein                             78   4e-15
At4g35550.1 68417.m05052 homeobox-leucine zipper protein (HB-2) ...    29   1.5  
At3g28720.1 68416.m03586 expressed protein                             29   1.9  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    29   1.9  
At5g16300.1 68418.m01905 expressed protein                             28   4.5  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    28   4.5  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    28   4.5  
At3g25560.1 68416.m03178 protein kinase family protein contains ...    28   4.5  
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro...    27   5.9  
At4g17370.1 68417.m02604 oxidoreductase family protein weak simi...    27   7.9  

>At5g51720.1 68418.m06414 expressed protein
          Length = 108

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = +3

Query: 171 VPPTVVVGGISYYSYQTIKKARISGSGQINPIIRKDIKKVVDFIDIEDITEKAV-LCRCW 347
           +P   V GG      Q +   R  G G INP IRK+  KVVD + + ++++     CRCW
Sbjct: 18  LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCW 77

Query: 348 RSKNWPYCDGAHGPHNRETGDNTGPVVVR 434
           RS  +P CDG+H  HN+  GDN GP++++
Sbjct: 78  RSGTFPLCDGSHVKHNKANGDNVGPLLLK 106


>At4g35550.1 68417.m05052 homeobox-leucine zipper protein (HB-2) /
           HD-ZIP protein HB2 homeodomain protein [Populus tremula
           x Populus tremuloides] GI:3955021; contains Pfam
           PF00046: Homeobox domain
          Length = 268

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 346 GEAKIGLIVTVLTDPTIERPETIPGLSSSGTNRLKVTETGSTQASTRDSSEVFKS 510
           GE+++   V  L +  + RPE++ GL    +N   +  T +T  + R     F+S
Sbjct: 170 GESEVETEVEALNEKRVVRPESLLGLPDGNSNNNGLGTTTATTTAPRPEDLCFQS 224


>At3g28720.1 68416.m03586 expressed protein 
          Length = 687

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 346 GEAKIGLIVTVLTDPTIERPETIPGLSSSGTNRLKVTETGSTQASTRDSSEVFKSL 513
           G A I L++ ++T  +   P  IPGL +  TN+ ++    S  + T  SS + +SL
Sbjct: 13  GSASIFLLLLLITTTSSSSPP-IPGLDTFLTNQYRLDPKSSNDSFTSLSSSLKRSL 67


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 234 RISGSGQINPIIRKDIKKVVDFIDIEDITEKAVLCRCWRSKNWP 365
           ++   G++  +I KD+    D +++E+I + A+LC  +   + P
Sbjct: 522 KLHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRP 565


>At5g16300.1 68418.m01905 expressed protein 
          Length = 1068

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 403  PETIPGLSSSGTNRLKVTETGSTQASTRDSSEVFKSLQQ 519
            P + P LSS  TN++ +  T S  AS R+S + F + +Q
Sbjct: 960  PISAPALSSRSTNKVSIPVT-SNDASARNSWKAFTNGEQ 997


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 96  YLAGLPIPDSIGGWFRLGVKD-WLALVPPTVVVGGISYY 209
           YL G+P+   +G W  +G    W+ L+   +   G+  Y
Sbjct: 441 YLVGMPVAVGLGFWAGIGFNGLWVGLLAAQISCAGLMMY 479


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 252 QINPIIRKDIKKVVDFIDIEDITEKAVLC 338
           ++  I+ KD+K   D I++E++ + A+LC
Sbjct: 536 KLEQIVDKDLKSNYDRIEVEEMVQVALLC 564


>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 252 QINPIIRKDIKKVVDFIDIEDITEKAVLC 338
           ++  I+ KD+K   D I++E++ + A+LC
Sbjct: 535 KLEQIVDKDLKSNYDRIEVEEMVQVALLC 563


>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 4 (SAC4)  GI:31415724
          Length = 831

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 201 SYYSYQTIKKARISGSGQINPIIRKDIKKVVDFIDIEDITEKAVLC 338
           S + +  ++K + +GS  I    ++D+  V +F+DIE ++    LC
Sbjct: 706 STHFFGDVQKVQHNGSSSIYLSEQEDMSSVSNFVDIEWLSSSENLC 751


>At4g17370.1 68417.m02604 oxidoreductase family protein weak
           similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC
           1.1.1.18). {Bacillus subtilis}; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 368

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 359 IFASPTSTKHCLLCNILNINKIYHLL 282
           + +SP  T H +L +I+N +K +H+L
Sbjct: 82  VVSSPNMTHHQILMDIINYSKPHHVL 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,417
Number of Sequences: 28952
Number of extensions: 221657
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)