Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C19
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 1.9
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 26 1.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 2.5
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 5.7
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 5.7
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 5.7
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 24 7.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 10.0
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 24 10.0
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 1.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 12 KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 179
KQ S+ I + + S + S + L+ T A+I Y EE+ PLN N Y D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371
Query: 180 SVVVGD 197
+ +V D
Sbjct: 372 TSIVLD 377
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 389 VQKHSKLFWEVIXDY 345
V KH KLFW V DY
Sbjct: 4 VGKHVKLFWNVYSDY 18
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 2.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 54 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 161
+V S T AS TPLS++ +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 63 SALVTQASLTPLSNLTVAFINYEELSPLNNINS 161
S T AS TPLS++ +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 54 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 161
+V S T AS TPL+++ +PL ++NS
Sbjct: 345 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 54 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 161
+V S T AS TPL+++ +PL ++NS
Sbjct: 459 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 120 INYEELSPLNNINSYEQLYDSVV 188
+N ++ L +INS E LYDS V
Sbjct: 21 LNDAKIKSLTSINSAEYLYDSFV 43
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 24.6 bits (51), Expect = 5.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 267 VNRLLSEGKRNIVEYAYKLWNMFGTNIVXDHFPKEF 374
V+RLL KRN+ + + + + NI+ ++ KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 112 LHLLTTKSFRHSITSTLTN 168
+ +L ++ RHS+TST+TN
Sbjct: 284 IEVLYMENSRHSVTSTITN 302
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 303 VEYAYKLWNMFGTNIVXDHFPKEFR 377
V+ A W TN+ D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 394 SSFKNILNSFGK*SXTMFVPNMFHSL*AYSTMFLLPSESS 275
+S +L+SFG S T +PN H + M +PS S
Sbjct: 153 NSNDQVLSSFGDLSSTFEMPNNIHPP-EVAPMIAIPSSRS 191
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 10.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 129 EELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLENDGXGEVINLVVNRLLS 284
EE+ + S E+ D+ V D K + EN+ EVI+ VN L S
Sbjct: 231 EEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLES 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,221
Number of Sequences: 5004
Number of extensions: 23347
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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