Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C19
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17270.1 68414.m02103 expressed protein                             27   3.5  
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    26   8.0  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    26   8.0  
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    26   8.0  
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim...    26   8.0  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    26   8.0  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    26   8.0  

>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 60  LSALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLEND 239
           +S+ V ++ L  L+ L    +    L    N NS   +  SVV+ + KAA++K + +  +
Sbjct: 102 MSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVIDNVKAALLKQISVNKE 161


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 5   LRETTANRDQRNDFNDNGAECTGDASVPYTSKQPHGCIY*LRRAFATQ*HQLLRTVVRQC 184
           +  T  N++++ +  D   +  G +S P    +P   +  LR   +    ++L   +  C
Sbjct: 28  IETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNFLDALRERLSGGQFRMLNEKLYTC 87

Query: 185 SCRRLQGCSNEDPQI 229
           S +       EDPQ+
Sbjct: 88  SGKEALDYFKEDPQM 102


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +2

Query: 5   LRETTANRDQRNDFNDNGAECTGDASVPYTSKQPHGCIY*LRRAFATQ*HQLLRTVVRQC 184
           +  T  N++++ +  D   +  G +S P    +P   +  LR   +    ++L   +  C
Sbjct: 28  IETTPKNQNEKKNQRDTKNQQHGGSSAPSKRPKPSNFLDALRERLSGGQFRMLNEKLYTC 87

Query: 185 SCRRLQGCSNEDPQI 229
           S +       EDPQ+
Sbjct: 88  SGKEALDYFKEDPQM 102


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 120 INYEELSPLNNINSYEQLYDSVVVGDY 200
           INY+++  L   +    ++DS VVGDY
Sbjct: 272 INYDQIKRLIVDHKARPVFDSTVVGDY 298


>At1g59670.1 68414.m06711 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 233

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 297 NIVEYAYKLWNMFGTNIVXDH 359
           NIVEY  + WN  G++I+  H
Sbjct: 72  NIVEYIDETWNSSGSSILPSH 92


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 85  PLHL*ATSRLHLLTTKSFRHSITSTLTNSCTTV 183
           PL + +   LH L  K F H +TS   ++C  +
Sbjct: 307 PLLIRSCPNLHTLVIKGFVHRVTSKCGDACACI 339


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 117 FINYEELSPLNNINSYEQLYDSVVVGDYKAAVMKTLRLENDGXGE 251
           F+NY  L         E + D    GD+  A ++   L   G GE
Sbjct: 619 FVNYGYLKNWKEKEVCESIRDRFTTGDWSKAALRDKNLGTGGEGE 663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,261,705
Number of Sequences: 28952
Number of extensions: 116780
Number of successful extensions: 358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)