Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C18
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   0.63 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   2.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   4.5  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    24   7.8  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.8  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    24   7.8  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 343 SQENICAFCGMRYSRVLMRSPLPQLTEHSDHGP 245
           S  N  +F   RYSR   RSP   ++E+SD  P
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSP 234


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 75  PFYNTDVKDIPPMARLHLTREKLISKSCDEQTLQSMVAEE 194
           PFYN+  +  P  A  ++ R+  +S   DE+ ++ MV  E
Sbjct: 360 PFYNSKEESEPLAAHGYIYRDVDLSLETDEKPVKLMVRTE 399


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/68 (20%), Positives = 28/68 (41%)
 Frame = +3

Query: 9   SETIPREKMYKITTMYPEDPRAPFYNTDVKDIPPMARLHLTREKLISKSCDEQTLQSMVA 188
           ++  P  K+       P  P  PF +   K +PP   L  ++   +S++     L  + A
Sbjct: 285 TDITPEIKLEHSDNNSPSKPEIPFRHPTSKPLPPKP-LSRSKSSSLSRNQTRSQLNDLSA 343

Query: 189 EEEENTQT 212
           E +  + +
Sbjct: 344 ENDSTSNS 351


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 271 LTEHSDHGPHSLTAHSGLLTVCVFSSSSATIDCSV 167
           LT H+DH   +++AH+G L     SS   ++  S+
Sbjct: 268 LTIHADHEGGNVSAHTGHLVGSALSSPFLSMAASL 302


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 66  PRAPFYNTDVKDIPPMARLHL 128
           P   +Y  D   +PP AR HL
Sbjct: 366 PMYTYYERDAYPLPPSARAHL 386


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 166 CSSQDLEMSFSLVRWSRAIG-GMSLTSVL 83
           CS QD+ + F    W   IG G+ + S++
Sbjct: 345 CSKQDISVEFQFFFWFTIIGFGLLIFSIM 373


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 186 AEEEENTQTVNRPECAVSEW 245
           AE  +N +  N P C + EW
Sbjct: 257 AESRKNMEAGNAPACMMEEW 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,349
Number of Sequences: 5004
Number of extensions: 27638
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)