Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C18
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890...    31   0.35 
05_07_0238 + 28597399-28598286                                         29   1.8  
01_07_0102 - 41093042-41093231,41093385-41093473,41093730-410939...    29   1.8  
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387...    27   5.6  
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298...    27   7.5  
06_03_0374 + 20026179-20026661,20027170-20027280,20027372-200274...    27   7.5  
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659...    27   7.5  
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244...    26   9.9  

>02_04_0203 -
           20888010-20888162,20888242-20888469,20888969-20889073,
           20889148-20889225,20889308-20889382,20890037-20890123,
           20890216-20890283,20890396-20890483,20890583-20890683,
           20890793-20890913,20891008-20891169,20891271-20891441
          Length = 478

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 219 RPECAVSEWGPWSECSVSCGKGLRMRTREYRMPQKA 326
           RP  + +    +  CS S G GLR+R+R  R PQKA
Sbjct: 25  RPRVSAAAAASFPCCSTSAG-GLRLRSRPSRFPQKA 59


>05_07_0238 + 28597399-28598286
          Length = 295

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 403 LSPSHSGIVATHI---SLETSCLSQENICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLT 233
           +S  H  +  T++   +L  S +S +++C  CG+RY +   R+     T     G   +T
Sbjct: 164 ISAVHFAVSPTYVVSLTLPPSYVSLQSLCNACGIRYKKEERRAAATTTTADGAAGCGFIT 223

Query: 232 AHSG 221
           A  G
Sbjct: 224 AQRG 227


>01_07_0102 -
           41093042-41093231,41093385-41093473,41093730-41093924,
           41095173-41095334,41095412-41095484,41095691-41095758,
           41095847-41095894,41096012-41096101,41096204-41096286,
           41097000-41097066
          Length = 354

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 65  ILRIHRCDLVHLFTWNCFR 9
           +L+I+  DL  LFTW C R
Sbjct: 56  VLQIYTADLTQLFTWTCAR 74


>10_01_0352 -
           3870921-3871272,3871383-3871479,3871541-3871621,
           3874854-3875028,3875650-3875661
          Length = 238

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 195 EENTQTVNRPECAVSEWGPWSECSVSCGKGLRMRTREYRMPQKAQM 332
           E + + V   E  + +W PW E + S   G+  R  E R P  A++
Sbjct: 103 ELSGRMVGPTEMGLEQWVPWQESAGSDPNGVGRRAPEGRAPGCARV 148


>08_01_1077 -
           11027732-11027839,11028346-11028477,11029722-11029802,
           11029911-11030063,11030167-11030281,11030282-11030927,
           11031409-11031613,11031696-11031758
          Length = 500

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 373 THISLETSCLSQENICAFCGMRYSRVLMRSPLPQLTEHSDH 251
           T ISL   CLS +    FC +R+S  L    L    E  DH
Sbjct: 360 TSISLGEWCLSDKFSRLFCLLRHSPELKELTLKLEVERQDH 400


>06_03_0374 +
           20026179-20026661,20027170-20027280,20027372-20027416,
           20029610-20029682,20029762-20029874,20030009-20030068,
           20031518-20031565,20031658-20031726,20032928-20033092,
           20033630-20033680,20034774-20034803
          Length = 415

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -2

Query: 205 VFSSSSATIDCSVCSSQDLEMSFSLVRWSRAIG 107
           VFS+    +DC +C   +  + F+ + ++  +G
Sbjct: 207 VFSNCGQVVDCRICGDPNSVLRFAFIEFADDVG 239


>01_05_0671 -
           24164490-24164544,24164920-24165086,24165787-24165941,
           24166291-24166458,24167471-24167552
          Length = 208

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 GPWSECSVSCGKGLRMR 296
           GPW +CS  C  G+R R
Sbjct: 91  GPWMKCSSPCDGGVRYR 107


>05_06_0238 -
           26621843-26622457,26622625-26623375,26624372-26624418,
           26624632-26624740,26624969-26625050,26625164-26625248,
           26625320-26625439,26625735-26625800,26625994-26626041,
           26626148-26626196,26626576-26626613
          Length = 669

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 319 CGMRYSRVLMRSPLPQLTE 263
           C  RYS+V++ +PLP L E
Sbjct: 437 CRCRYSKVVIDAPLPDLRE 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,762
Number of Sequences: 37544
Number of extensions: 228737
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)