Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C18
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    30   0.009
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 0.009
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 298 VLMRSPLPQLTEHSDHGPHSLTAHSGLLTVCVFSSSSATIDCS 170
           +L    LP+ + ++   P S   +SGL  VCV  SS    +CS
Sbjct: 77  LLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVAISSRMEYECS 119


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 3   PNSETIPREKMYKITTMYPEDPRAPFYNTDVKDIPPMARLHLTREKLIS 149
           P+++ +P+    +     P  P  P Y   V  +     L   REKL S
Sbjct: 768 PSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSS 816



 Score = 22.2 bits (45), Expect = 2.3
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +3

Query: 39   KITTMYPEDPRAPFYNTDVKDIPPMARLHLTREKLISKSCDEQTLQSMVAEEEENTQTVN 218
            K T    ED     Y    K+ P +  +H+T E +       +TL  ++  +    +  N
Sbjct: 976  KPTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYEYQIHPKTLNEVLQADMNALKNFN 1035

Query: 219  RP 224
            +P
Sbjct: 1036 QP 1037


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 304 SRVLMRSPLPQLTEHSDHGPHSL 236
           S+++ R P+  +  H DHG  +L
Sbjct: 139 SQLIKRHPIVTIMGHVDHGKTTL 161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 294 RTREYRMPQKAQMFSC 341
           R  +YR    AQ++SC
Sbjct: 66  RAEDYRQEVHAQVYSC 81


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 43  SQRCILRILGRRFTIQTLRTYRRWRDSTLPGRNSS 147
           SQR + R+L    ++  L  Y    D  + GR+ S
Sbjct: 16  SQRPLARMLALLVSLHRLSIYSGGSDWRVAGRSES 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,902
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)