Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C18
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted... 31 0.39
At5g14570.2 68418.m01709 transporter, putative similar to trans-... 28 2.1
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 28 2.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 2.1
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 28 2.7
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 28 2.7
At1g13880.1 68414.m01629 ELM2 domain-containing protein contains... 28 2.7
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 27 3.6
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 4.8
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 27 4.8
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 27 4.8
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 27 6.3
At4g32440.2 68417.m04618 agenet domain-containing protein contai... 27 6.3
At4g32440.1 68417.m04617 agenet domain-containing protein contai... 27 6.3
At4g24840.1 68417.m03558 expressed protein 27 6.3
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 27 6.3
At5g57010.1 68418.m07115 calmodulin-binding family protein conta... 26 8.3
At5g41950.1 68418.m05108 expressed protein 26 8.3
At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa... 26 8.3
>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 234
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -2
Query: 280 LPQLTEHSDHGPHSLT-AHSGLLT----VCVFSSSSATIDCSVC 164
LP+ T H H PH+LT +S T C SS T +CS+C
Sbjct: 60 LPRETNHKSHQPHTLTLIYSPKSTYTCNACGEYGSSFTYNCSIC 103
>At5g14570.2 68418.m01709 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 397
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -2
Query: 382 IVATHISLETSCLSQENICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTAHSGLLTVCV 203
++++ ++L S +S I +F G +SR+ M PL L GP + +A LT V
Sbjct: 65 VISSDLNLSASTVSAAGIASFAGSIFSRLAM-GPLCDLI-----GPRTSSAILSFLTAPV 118
Query: 202 FSSSS 188
S+S
Sbjct: 119 ILSAS 123
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -2
Query: 382 IVATHISLETSCLSQENICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTAHSGLLTVCV 203
++++ ++L S +S I +F G +SR+ M PL L GP + +A LT V
Sbjct: 65 VISSDLNLSASTVSAAGIASFAGSIFSRLAM-GPLCDLI-----GPRTSSAILSFLTAPV 118
Query: 202 FSSSS 188
S+S
Sbjct: 119 ILSAS 123
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 205 VFSSSSATIDCSVCSSQDLEMSFSLVRWSRAIGGMSLTSV 86
+FSS +DC +C + + F+ V +S G S S+
Sbjct: 147 LFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -2
Query: 358 ETSCLSQENICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTAHSGLLTVC 206
ETS CA C + S V P+P + E S H LT +C
Sbjct: 215 ETSLYDMFYHCATCDLSMSPVCALKPVPIVIEQSRSHHHPLTFFPAQALIC 265
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = -2
Query: 328 CAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTAHSGLLTVCVFSSSSATIDCSVC 164
C C + + P+P + +H PH +T F + AT+ C++C
Sbjct: 193 CVTCDLSMDPICAMEPIPFVVDHPKSHPHPIT----------FFPTQATLACNIC 237
>At1g13880.1 68414.m01629 ELM2 domain-containing protein contains
Pfam profile: PF01448 ELM2 domain
Length = 424
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Frame = +3
Query: 168 TLQSMVAEEEENTQTVNRPECAVSEWGPWSECS----VSCGKGLRMR----TREYRMPQK 323
T+QS ++ E + RP C+ E G W S V G + +E Q
Sbjct: 91 TIQSTISHESPESDIPWRPVCSGEEDGYWCPISPRKTVPIGSDYQADIPECVKEEANDQS 150
Query: 324 AQMFSCDRQLVSKEMCVATIPECE 395
Q D + V+ + CV +P+CE
Sbjct: 151 GQGVGYDEEQVTGK-CVIPMPDCE 173
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 394 SHSGIVATHISLETSCLSQENICAFC 317
+HS I + + TSCLS + C C
Sbjct: 286 NHSKIDGKSVEMSTSCLSHQGDCGLC 311
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -2
Query: 331 ICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTA----HSGLLTVCVFSSSSATIDCS 170
+C FCG + S V RS L D HS A HS L ++ A++ CS
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCS 61
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 331 ICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTA----HSGLLTVCVFSSSSATIDC 173
+C FCG + S V RS L D HS A HS L ++ AT+ C
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 331 ICAFCGMRYSRVLMRSPLPQLTEHSDHGPHSLTA----HSGLLTVCVFSSSSATIDC 173
+C FCG + S V RS L D HS A HS L ++ AT+ C
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 298 VLMRSPLPQLTEHSDHGPHSLTAHSGLLTVCVFSSSSATIDCSVC 164
V P+P +H+ PH LT FS S A + C+VC
Sbjct: 190 VCAMKPVPSFIDHTKRHPHPLT----------FSPSKAFLPCNVC 224
>At4g32440.2 68417.m04618 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 393
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 252 WSECSVSC-GKGLRMRTREYR-MPQKAQMFSC 341
WSEC+ SC G +MR+ E QK SC
Sbjct: 180 WSECAESCTGNPKKMRSLEKEGQQQKVDAISC 211
>At4g32440.1 68417.m04617 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 377
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 252 WSECSVSC-GKGLRMRTREYR-MPQKAQMFSC 341
WSEC+ SC G +MR+ E QK SC
Sbjct: 180 WSECAESCTGNPKKMRSLEKEGQQQKVDAISC 211
>At4g24840.1 68417.m03558 expressed protein
Length = 756
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 76 RFTIQTLRTYRRWRDSTLPGR--NSSPSP 156
R T+Q L Y W S L R N+SPSP
Sbjct: 487 RLTLQLLSRYSFWVSSALNNRKSNASPSP 515
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 36 YKITTMYPEDPRAPFYNTDVKDIPPMARLHLTREKLISKSC 158
++ + P D + + +K IPP+ R+ LTR+ ++ C
Sbjct: 164 FETALLTPNDTLSDIHIPLLKAIPPVTRMALTRDTWVTVLC 204
>At5g57010.1 68418.m07115 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 495
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 198 ENTQTVNRPECAVSEWGPWSECSVSCGKGL 287
E +T ++PE AVS W + GKGL
Sbjct: 172 EPNKTNDKPESAVSRWARAGTKAAKVGKGL 201
>At5g41950.1 68418.m05108 expressed protein
Length = 565
Score = 26.2 bits (55), Expect = 8.3
Identities = 16/73 (21%), Positives = 31/73 (42%)
Frame = +3
Query: 9 SETIPREKMYKITTMYPEDPRAPFYNTDVKDIPPMARLHLTREKLISKSCDEQTLQSMVA 188
SE P E +T PE+ ++ +V+ + + LT L +E ++S
Sbjct: 67 SEVKPEEVKTVVTDAKPEEAQSEVKPEEVQSVVTDTKPDLTDVDLSPGGSEEIPIRSTEV 126
Query: 189 EEEENTQTVNRPE 227
E+E T + + +
Sbjct: 127 EQESTTSVLKKDD 139
>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 624
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 73 RRFTIQTLRTYRRWRDSTLPGRNSSP 150
RR+ T+ RRWR +T ++SSP
Sbjct: 522 RRYRTFTVHHRRRWRKTTAEEKHSSP 547
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,646,908
Number of Sequences: 28952
Number of extensions: 161931
Number of successful extensions: 562
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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