Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C16
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.38
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 2.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 4.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.7
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 6.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.2
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 8.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 8.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.2
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.5 bits (63), Expect = 0.38
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -3
Query: 534 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 367
+DEHL Q + E ++P+ +T P DA + SS + Q FSPRS
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506
Query: 366 DNAVHLER 343
D+ ++ +
Sbjct: 507 DSFSNISK 514
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 262 NDKRLDMLEIDSFVYKLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFDTTGTGFKSIE 441
N K L+ + + SFV K+N +++S E+ +IE+ + KN++ F G KS E
Sbjct: 754 NYKSLESIGLTSFV------KDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 385 KNILEKGFDTTGTGFKSIESWWYKSRLG 468
KNI + F+TTG G K +E YK G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -1
Query: 98 ISAWSR*SAFVISMSYSSIKVTIFSDTTRS 9
+S+ R +F+++ SS+K+T+F D+ ++
Sbjct: 868 LSSDDRIKSFIVAPDDSSVKITLFDDSQKT 897
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 200 TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 319
TQS Y +T+ W+ S T+ S+ +++ NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 393 YVFSPRSLFDNAVHLERAADDVVLTSVEFIDEAIDF--EHVKAFVIDAHEAA 244
+V + +D+++H R D++L E ID A+ F +H++ + + ++ +
Sbjct: 152 FVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 25 EKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKV 168
EK+ T + ITN+ Y D +M+ + SD++ +H+ +V
Sbjct: 194 EKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHENEDHEVHEV 241
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 137 CGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAA 250
CG++ SL +RLL + VY IAWA+
Sbjct: 203 CGLIANSLFN--DTFSSLRLLDDNSVYTFSTKNIAWAS 238
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 258 AHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERL 154
A E +A G NKY N+ V SLI N H L
Sbjct: 1147 ATEIHYAASVGQNKYLNEYVASLIRTNEKTHSTEL 1181
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 447 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 343
P+LD ETCS+ V FSP ++ N + R
Sbjct: 27 PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,350
Number of Sequences: 5004
Number of extensions: 45498
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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