Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C16
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c re...    30   5.3  
D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.         30   5.3  
BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c ...    30   5.3  
M29063-1|AAA36576.1|  303|Homo sapiens protein ( Human hnRNP C2 ...    30   7.0  
BC007052-1|AAH07052.1|  306|Homo sapiens heterogeneous nuclear r...    30   7.0  
AK223517-1|BAD97237.1|  256|Homo sapiens Heterogeneous nuclear r...    30   7.0  
AB209527-1|BAD92764.1|  313|Homo sapiens Heterogeneous nuclear r...    30   7.0  

>L16842-1|AAA20046.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core I protein protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 462 PWLSAQASVTSRNPRRFASPDVRHRD 539
           PW  A+ +V +  P RF   ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279


>D26485-1|BAA05495.1|  480|Homo sapiens core I protein protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 462 PWLSAQASVTSRNPRRFASPDVRHRD 539
           PW  A+ +V +  P RF   ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279


>BC009586-1|AAH09586.1|  480|Homo sapiens ubiquinol-cytochrome c
           reductase core protein I protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 462 PWLSAQASVTSRNPRRFASPDVRHRD 539
           PW  A+ +V +  P RF   ++RHRD
Sbjct: 254 PWTYAEDAVPTLTPCRFTGSEIRHRD 279


>M29063-1|AAA36576.1|  303|Homo sapiens protein ( Human hnRNP C2
           protein mRNA. ).
          Length = 303

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 411
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 89  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 123


>BC007052-1|AAH07052.1|  306|Homo sapiens heterogeneous nuclear
           ribonucleoprotein C (C1/C2) protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 411
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 89  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 123


>AK223517-1|BAD97237.1|  256|Homo sapiens Heterogeneous nuclear
           ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2) variant
           protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 411
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 39  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 73


>AB209527-1|BAD92764.1|  313|Homo sapiens Heterogeneous nuclear
           ribonucleoproteins C1/C2 variant protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 307 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 411
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 96  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,206,990
Number of Sequences: 237096
Number of extensions: 1606952
Number of successful extensions: 4242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4241
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)