Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C15
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    29   0.59 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.59 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   1.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   4.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   5.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   7.2  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   7.2  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    25   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.5  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   9.5  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    25   9.5  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    25   9.5  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   9.5  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    25   9.5  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 396 GFRLFLFSRLL--PDPYVDVPTYSIQDVRLLWFQLF 295
           G RL  +S L     PYV VP YSI+ +   ++ LF
Sbjct: 222 GLRLLAYSLLFMYQFPYVSVPIYSIRQMYTCFYSLF 257


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 271 GLARPWRREQLKPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVH 450
           G A  W+     P  + I+D        W GK  +E +K  A +      S K +  W  
Sbjct: 276 GSAVFWQAVLYPPVFAKIVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQ 335

Query: 451 VTR 459
           +TR
Sbjct: 336 ITR 338


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +1

Query: 274 LARPWRREQLKPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHV 453
           L +PW  +Q  P +  ILD  SG I  W   + T +E           L+       +  
Sbjct: 129 LNQPWGADQYSPLDYTILDHHSGTIAQW---RDTIEEIHRRGFYLVLDLTISTLGDLIGF 185

Query: 454 TRVLQGTEPAAFKQYFSTWR 513
            + L  T P +  ++ + W+
Sbjct: 186 RKYLNSTTPFSLFEHEAVWK 205


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 102 SNEVDTQKFFTALGSGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDSSGKSQG 266
           S   D+      +  GT     +ES+  DD+    +E    + S VSD S K +G
Sbjct: 332 SINADSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEG 386


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 304 KPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQG-TEP 480
           +PQ S ++  V     +   +Q  E+E+++   KAQ    AK       V RV++G T P
Sbjct: 636 RPQGSALVKLVDAEELIAAREQKLEEERAKQAKKAQ----AKAEQEKKQVERVMKGKTSP 691

Query: 481 A----AFKQYFS 504
           +     FK+Y S
Sbjct: 692 SEMFKMFKEYLS 703


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 168 EESAGGDDQAFERNEEQTVSLSEVSDSSGKSQGD 269
           EESAG D +  E N+EQ  S    S+   +   D
Sbjct: 35  EESAGFDSEELEDNDEQGYSFGVNSEDDEEIDSD 68


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 415 FAGLLSWLQTFPFQSTASRSIRRCSHLQYPGCTTPVVSTV 296
           FA L+  +  F F   + R I    HL+  GC +    TV
Sbjct: 191 FAFLVGSMSRFNFVMVSDRFIEEIEHLEKSGCDSRQKETV 230


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 12  VEKLKAISMANQIRDQDHNGRGRVEIIDQYSNEVD 116
           +E  KA S  N IR++ H+G    ++ID    + D
Sbjct: 770 IEFFKAGSALNLIREKAHSGVVNQKVIDSIKQQPD 804


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 144 SGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDSSGKS 260
           S + D   E S+ G D +   +  ++ S SE +DSS  S
Sbjct: 148 SSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS 186



 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 144 SGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDSSGKS 260
           S + D   E S+ G D +   +  ++ S SE +DSS  S
Sbjct: 202 SSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS 240


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 159 IVPEESAGGDDQAFE----RNEEQTVSLSEVSDSSGKSQG 266
           I+P E++  DD A       NEE+  S S+ S   GK  G
Sbjct: 438 ILPNETSESDDDANSISSMENEEERTSDSKSSAKQGKGNG 477


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 189 DQAFERNEEQTVSLSEVSDSSGKSQGDGPGQAMASGTVETTGVVHPGYC 335
           +Q F   +++    S +S  + +   DG  +A   GT++T  +   G+C
Sbjct: 13  EQDFRAVDDRVRGGSSISHLTEEKDSDGKSRAKFWGTLDTKTLGGAGFC 61


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 183 GDDQAFERNEEQTVSLSEVSDSSGKSQ 263
           G ++  E +  QTV+LSE+S+++ K Q
Sbjct: 96  GPERTSEVSLPQTVNLSEISNNNDKGQ 122


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
 Frame = +1

Query: 205 GTKNRL*VFQKYQTAAVKVKATGLAR-PWRREQLKPQESYILDTVSGNIYVWIGKQSTEK 381
           G +  L   Q     AV    T     PW  +Q  P +  +LD   G I  W G  + E+
Sbjct: 106 GVRQSLDYLQGMGVKAVYFAGTPFVNMPWGADQYSPLDFTLLDPHLGTINDWRG--TIEE 163

Query: 382 EKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTWR 513
             S+ M      L+       +        T P  F ++ + W+
Sbjct: 164 MHSKGMYVIVD-LTVATLADLIGFEGFTNTTTPFTFIEHNALWK 206


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 283 PWRREQLKPQESYILDTV 336
           P  REQ+ P E+Y+LD +
Sbjct: 668 PNTREQVAPHETYVLDVL 685


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 54  DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 182
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 54  DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 182
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 138 LGSGTRDIVPEESAGGDDQAFERNEEQTVSLSEVSDSSGKSQ 263
           L   TR+   E  A G++ A E  EE+     E +++  +++
Sbjct: 290 LSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDETR 331


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 54  DQDHNGRGRVEIIDQYSNEVDTQKFFTALGSGTRDIVPEESAG 182
           D+   GR     +    ++VDT K    L SG + +VP  + G
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARG 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,779
Number of Sequences: 5004
Number of extensions: 45174
Number of successful extensions: 180
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)