Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C15
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 504 REVLFEGSRLSALQYSGYV---DPRW 436
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 504 REVLFEGSRLSALQYSGYV---DPRW 436
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 468 LQYSGYVDPRWIIFS*QSLLGFCHGFRLFLFSRLLPDPYVDVPTY 334
           + ++G   P  ++F  +SL        L    R L + +VD PT+
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 165 PEESAGGDDQAFERNEEQTVSLSEVSDSSGKSQGDGP 275
           PEES+GG +  +  +    ++ +  S   G S    P
Sbjct: 57  PEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSP 93


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 28  QSLWPIRSEIRTTTVE 75
           ++LWP   ++R +TVE
Sbjct: 578 RALWPTEWKVRPSTVE 593


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 219 SVLRSFRKLDRHLRHFLPALYPWCLI 142
           SVL+    L RH  +FL  +Y  C++
Sbjct: 232 SVLQVSFNLQRHTGYFLIQVYVPCVL 257


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 219 SVLRSFRKLDRHLRHFLPALYPWCLI 142
           S+L  +  L RH+ +FL  +Y  C++
Sbjct: 201 SMLLVYFHLQRHMGNFLIQVYGPCVL 226


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 468 GH*AGCLQTILLDLEG 515
           GH +GCLQ ++  L+G
Sbjct: 290 GHWSGCLQFLVPMLQG 305


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 468 GH*AGCLQTILLDLEG 515
           GH +GCLQ ++  L+G
Sbjct: 258 GHWSGCLQFLVPMLQG 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,738
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)