Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C14
         (247 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   3.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           19   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 143 IYRRRKIYINHFLERALVDTQNRRVVYDSI 54
           I R++K++IN  L    V+  + +  YD +
Sbjct: 553 INRKQKVFINGTLIIENVERASDQATYDCV 582


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 227 SQQGRHIDDYSTPSS 183
           SQQ R++ +++ PS+
Sbjct: 27  SQQPRNVPNFAAPST 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,463
Number of Sequences: 336
Number of extensions: 895
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3749515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)