Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C14
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    31   0.021
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   1.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    24   2.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    24   2.4  
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    23   4.3  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   4.3  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.6  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    23   7.4  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    22   9.8  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 31.1 bits (67), Expect = 0.021
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKG------LD 164
           DQ+  A E+V+     +D +INNA +   D+  F+++   ++   V+  L+G        
Sbjct: 58  DQIETAIEKVIQTLGPIDVLINNAGL--ADDTPFEQLSHESWDHDVSLVLRGNYLTQRYV 115

Query: 165 CMGIDKGGRGGVVVNMSSL 221
              + K G+GG +VN+ S+
Sbjct: 116 IPHMAKQGKGGSIVNIGSV 134


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 66  NNAAVLSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGRGGVVVNMSSLLA 227
           N + V S DER+ KK    NF ++++S L G         G G      S++++
Sbjct: 95  NVSDVRSYDERNQKKSAFENFVSSMSSFLTGGGSSPTSSYGSGSASPRKSTVIS 148


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 88  TLKTAALFMTPSSLRYLSKTCSYAAASWS 2
           TLKTA  ++    L  L K  +Y +  WS
Sbjct: 527 TLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 151 KVLFTVAVKFISIIFLKERSSTLKTAALFMT 59
           K L+ +   F+ + F   R STL+ A +F+T
Sbjct: 372 KKLWDLTEDFLDLSFSLSRLSTLQAAIIFLT 402


>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -2

Query: 201 LLHPFLLYQSPC-NLDLL 151
           LLHP+L+++  C N+D++
Sbjct: 33  LLHPYLVFRDACFNVDIV 50


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 243 DYWDLKPARKTY*RLLHPFLLYQSPC 166
           D + LKP   TY  LL  + L  S C
Sbjct: 393 DKYGLKPTHVTYRSLLKAYCLLPSTC 418


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 54  DGVINNAAVLSVDERSFKKMIDINFTATVNS 146
           DG I N    S  +RS   M D NF+    S
Sbjct: 84  DGAIVNVDKESFSKRSTTNMFDFNFSCYFGS 114


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 107 LERALVDTQNRRVVYD 60
           +E A V TQN R  YD
Sbjct: 89  IEHARVQTQNHRFTYD 104


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 194 WSSRQYVFLAG 226
           W+  QYVFLAG
Sbjct: 42  WTHLQYVFLAG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,695
Number of Sequences: 5004
Number of extensions: 15937
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)