BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C14
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 38 9e-04
04_03_0828 - 20118303-20119086,20119197-20119240 33 0.042
02_03_0386 + 18404641-18404673,18406366-18406558,18406688-184067... 31 0.098
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 30 0.30
03_02_0695 + 10472174-10472286,10472390-10473239 29 0.69
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 28 1.2
06_02_0052 - 10964659-10964919,10964938-10965006,10965069-109651... 27 1.6
09_03_0189 - 13300803-13300988,13301066-13301158,13301242-133013... 27 2.8
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802... 27 2.8
10_06_0052 + 10106778-10107017,10107420-10107969,10108134-101083... 26 3.7
07_03_1590 + 27960241-27961104 26 3.7
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 26 4.9
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 26 4.9
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 26 4.9
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 26 4.9
07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550 25 6.4
07_03_1587 + 27937243-27937251,27937813-27937872,27938007-279380... 25 6.4
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 25 6.4
01_04_0145 + 16709023-16709468,16709789-16710040,16710121-167102... 25 6.4
01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589 25 6.4
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 25 8.5
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 25 8.5
08_02_1422 - 26971803-26971900,26974083-26975061 25 8.5
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 25 8.5
07_03_0653 + 20297439-20298011 25 8.5
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 25 8.5
07_01_0801 - 6278119-6278304,6278382-6278474,6278576-6278636,627... 25 8.5
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 25 8.5
04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824... 25 8.5
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 25 8.5
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 25 8.5
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 25 8.5
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 38.3 bits (85), Expect = 9e-04
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Frame = +3
Query: 24 EQVLDKYRRLDGVINNAAVLSV-------DERSFKKMIDINFTATVNSTLKGLDCMGIDK 182
+ ++ + RLD ++NNA + +V D +FK+++D+NF TV+ T L + K
Sbjct: 136 QATVEHFGRLDHLVNNAGLANVCWFEEVPDVANFKQVLDVNFWGTVHPTHAALPHL---K 192
Query: 183 GGRGGVVVNMSSLLAL 230
RG + VN S+ L
Sbjct: 193 ASRGKIFVNSSASAVL 208
>04_03_0828 - 20118303-20119086,20119197-20119240
Length = 275
Score = 32.7 bits (71), Expect = 0.042
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +3
Query: 3 DQLAAAYEQVLDKYRRLDGVINNA--------AVLSVDERSFKKMIDINFTATVNSTLKG 158
D +AAA + + +Y +LD + NNA ++L + F +++ +N T T
Sbjct: 78 DDVAAAVDHAVARYGKLDVMFNNAGIGGAACHSILESTKADFDRVLAVNLTGPFLGTKHA 137
Query: 159 LDCMGIDKGGRGGVVVNMSSL 221
M GRGG ++ +SL
Sbjct: 138 ARVM--VAAGRGGCIIGTASL 156
>02_03_0386 +
18404641-18404673,18406366-18406558,18406688-18406773,
18407693-18407824,18407923-18408087,18409440-18409865
Length = 344
Score = 31.5 bits (68), Expect = 0.098
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +3
Query: 3 DQLAAAYEQVLDKYRRLDGVINNAAV---LSVDE----RSFKKMIDINFTATVNSTLKGL 161
DQ A E+ + + +L+ ++ NA + S DE +F KM+D+NF +V T L
Sbjct: 60 DQSRRAVEETVAHFGKLNHLVANAGIWSSCSFDEVTNITAFTKMMDVNFWGSVYPTYYAL 119
Query: 162 DCMGIDKGGRGGVVVNMSS 218
+ K +G +VV+ S+
Sbjct: 120 PHL---KASKGKLVVSCSA 135
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 29.9 bits (64), Expect = 0.30
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 18 AYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTA 134
A ++LD+ RRL+GV+ + + S DE F ++ I F++
Sbjct: 112 AKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSS 150
>03_02_0695 + 10472174-10472286,10472390-10473239
Length = 320
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 3 DQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDIN 125
+ + A E+ + +Y RLD + NNA VL R+ K ++ +
Sbjct: 100 EDVERAVERAVARYGRLDVLCNNAGVLGRQTRAAKSILSFD 140
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 33 LDKYRRLDGVINNAAV------LSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGRG 194
LDK+ +D ++NNA + + + + ++ +ID+N T T M K G+
Sbjct: 148 LDKWGTIDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQAATKIMMKKKKGK- 206
Query: 195 GVVVNMSSLLAL 230
++N++S++ L
Sbjct: 207 --IINIASVVGL 216
>06_02_0052 -
10964659-10964919,10964938-10965006,10965069-10965138,
10965861-10966420
Length = 319
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +3
Query: 60 VINNAAVLS--------VDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGRGGVVVNMS 215
V+NNA V D ++ +M+ +N +A T L G+ GRGG VVN+
Sbjct: 109 VVNNAGVAEPGAVYLHEADVEAWARMVRVNVSAVTEVTAAVLP--GMVARGRGGAVVNIG 166
Query: 216 S 218
S
Sbjct: 167 S 167
>09_03_0189 -
13300803-13300988,13301066-13301158,13301242-13301320,
13301409-13301519,13301582-13301746,13301917-13301990,
13302114-13302635
Length = 409
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 173 PHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
P I + +++++ I + ++ERA + QN+RVV
Sbjct: 212 PEEIAEYKKGLHKQKMITVAQYIERAFLHFQNKRVV 247
>05_03_0070 -
8023343-8023528,8023606-8023639,8024013-8024058,
8024139-8024389,8024473-8026001,8026128-8026496,
8026582-8026821
Length = 884
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVVYDSI*PSIFI 36
NP I + +++ + I + ++ RA + QN+RVV + SI I
Sbjct: 754 NPKEIAEYKKGLHKEKLITVTQYIGRAFLHFQNKRVVMAAYNLSIII 800
>10_06_0052 +
10106778-10107017,10107420-10107969,10108134-10108358,
10108552-10108865,10108880-10109214,10109298-10109549,
10109630-10109740,10109828-10109888,10110038-10110130,
10110208-10110264
Length = 745
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 179 INPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
+NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 595 MNPKEIAEYKKGLHKEKLITVTQYIGRAFLHFQNKRVV 632
>07_03_1590 + 27960241-27961104
Length = 287
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 6 QLAAAYEQVLDKYRRLDGVINNAAV---LSVDERSFKKMIDINFTATVN--STLKGL-DC 167
Q+AAA + + ++ RLD + NNAA+ D+ + + D + VN ++L G+
Sbjct: 86 QVAAAVDLAVARHGRLDVMHNNAAIPGRFPQDDMASVDLADFDAMMAVNARASLAGIKHA 145
Query: 168 MGIDKGGRGGVVVNMSSLLALNP 236
+ R GV++ +S + + P
Sbjct: 146 ARVMAPRRAGVILCTASAVGVLP 168
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +3
Query: 9 LAAAYEQVLDKYRRLDGVINNAAV-------LSVDERSFKKMIDINFTATVNSTLKGLDC 167
L AA + D + R+D +INNA + L E ++ +I N T + K + C
Sbjct: 91 LEAAVQSAWDAFGRIDVLINNAGLRGGVHSPLDWPEDEWETLIKTNLTGSW-LVAKHV-C 148
Query: 168 MGIDKGGRGGVVVNMSSLLALN 233
+ G V+N+SS+ LN
Sbjct: 149 RRMRDAKLKGSVINISSVSGLN 170
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 480 NPKEIAEYKKGLHKEKLISVTQYIGRAFLHFQNKRVV 516
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Frame = +3
Query: 6 QLAAAYEQVLDKYRRLDGVINNAAVL---------SVDERSFKKMIDINFTATV 140
Q+AAA + + ++ LD + NNA V+ SVD +F +M+ IN A +
Sbjct: 121 QVAAAVDLAVKRHGHLDILYNNAGVMGAMPQDDMASVDLANFDRMMAINARAAL 174
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 90 DERSFKKMIDINFTATVNSTLKGLDCMGIDKGGRGGVVVNMSS 218
D + +M +N +A T L G+ + GRGG VVN+ S
Sbjct: 163 DVEEWVRMARVNVSAVTEVTAAVLP--GMVERGRGGAVVNLGS 203
>07_03_1588 + 27942415-27942434,27942561-27942629,27942743-27943550
Length = 298
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 6 QLAAAYEQVLDKYRRLDGVINNAAV 80
Q+AAA + + ++ RLD V NNA +
Sbjct: 94 QVAAAVDLAVARHGRLDVVFNNAGI 118
>07_03_1587 +
27937243-27937251,27937813-27937872,27938007-27938008,
27938208-27939012
Length = 291
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 QLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDI-NFTATVNSTLKGL 161
Q+AAA + + ++ +LD ++NNA ++ R +D+ +F A + +G+
Sbjct: 88 QVAAAVDLAVARHGQLDVMVNNAGIVGSLSRPPLGALDLADFDAVMAVNTRGV 140
>04_04_0605 +
26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 30 VLDKYRRLDGVINNAAVLSVD 92
V D++ RLD +INNA + VD
Sbjct: 752 VRDQFGRLDILINNAGISGVD 772
>01_04_0145 +
16709023-16709468,16709789-16710040,16710121-16710231,
16710319-16710379,16710481-16710573,16710651-16710836
Length = 382
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 173 PHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
P I + +++ + I + ++ERA + QN+RVV
Sbjct: 191 PKEIAEYQKGLHKEKLITVAQYIERAFLHFQNKRVV 226
>01_03_0164 + 13349295-13349489,13349509-13349939,13350181-13350589
Length = 344
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 66 NNAAVLSVDERSFKKMI-DINFTATVNSTLKGLDCMGIDKGGRG 194
+N S D RSF ++ D ++TA S+ LD M GGRG
Sbjct: 283 SNTQTQSPDLRSFSNVVGDYSYTA-AQSSANRLDQMHHPVGGRG 325
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 790 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 826
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 782 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 818
>08_02_1422 - 26971803-26971900,26974083-26975061
Length = 358
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 148 VLFTVAVKFISIIFL-KERSSTLKTAALFMTPSSLRYLSKTCSYAA 14
VL T A+ ++ L R T+K ++ P ++ YLS C Y++
Sbjct: 24 VLITDAMNDDTVATLTSSRGHTIKVSSWISQPPAISYLSFHCHYSS 69
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 138 VNSTLKGLDCMGIDKGGRGGVVVNMSSLLALN 233
+NS LD + ++ G GGV V+ L ALN
Sbjct: 161 INSRFGKLDIL-VNNAGVGGVAVDQDGLRALN 191
>07_03_0653 + 20297439-20298011
Length = 190
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 157 PFKVLFTVAVKFISIIFLKERSSTLKTAALFMTPSSLRYLSKTCS 23
PF+ TVA K + + LK R+S++ T + + P S C+
Sbjct: 140 PFETATTVAGKAVVLGVLKIRASSVVTCGVTVFPLRKETTSPQCT 184
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 702 NPKEIAKYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 738
>07_01_0801 -
6278119-6278304,6278382-6278474,6278576-6278636,
6278724-6278834,6278915-6279166,6279250-6280367
Length = 606
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 414 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 450
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 739 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 775
>04_04_0359 +
24679907-24680146,24680511-24680939,24681111-24682402,
24682486-24682737,24682818-24682928,24683016-24683076,
24683178-24683270,24683348-24683533
Length = 887
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 695 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 731
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 636 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 672
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 697 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 733
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 176 NPHAI*TF*STIYRRRKIYINHFLERALVDTQNRRVV 66
NP I + +++ + I + ++ RA + QN+RVV
Sbjct: 644 NPKEIAEYKKGLHKEKLITVAQYIGRAFLHFQNKRVV 680
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,220,101
Number of Sequences: 37544
Number of extensions: 103209
Number of successful extensions: 266
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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