Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C14
         (247 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)             51   2e-07
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.047
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)             32   0.062
SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)               30   0.33 
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)                    29   0.44 
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)             27   1.8  
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)                   27   2.3  
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)              27   2.3  
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.1  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              26   4.1  
SB_25994| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_17921| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
          Length = 201

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
 Frame = +3

Query: 6   QLAAAYEQVLDKYRRLDGVINNAAVLSVDE---RS--FKKMIDINFTATVNSTLKGLDCM 170
           Q+ AA+++  D + RLD + NNA +   +    RS  +K +IDIN    +  TL GLD M
Sbjct: 70  QMEAAFQRTKDVFGRLDILCNNAGIAVRENDLLRSGAWKTIIDINVKGVILGTLLGLDHM 129

Query: 171 GIDKG-GRGGVVVNMSSL 221
           G+    G GG +VN++SL
Sbjct: 130 GVSGAKGHGGTIVNVASL 147


>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATV 140
           DQL  A+ + +  +  LD V NNA +L  DE  + K +D+N   ++
Sbjct: 61  DQLKDAFWETVSTHGHLDIVFNNAGIL--DEERWSKTLDVNLLNSI 104


>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
          Length = 253

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
 Frame = +3

Query: 6   QLAAAYEQVLDKYRRLDGVINNAAVLSVDER-------SFKKMIDINFTATVNSTLKGLD 164
           Q+   + ++   + RLD ++NNA +L    R        ++++   N   +     + + 
Sbjct: 71  QVMQLFARLDQHFGRLDVLVNNAGILETQMRLEQMELARWQRVFATNVFGSFLCCREAIK 130

Query: 165 CMGIDKGGRGGVVVNMSSLLA 227
            M   +GG GG +VN+SS  A
Sbjct: 131 RMSTRQGGNGGAIVNLSSAAA 151


>SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)
          Length = 312

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 12  AAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGR 191
           A + ++  +KY  + G+I  A   +  ++ F KMI +  T T  S L+ +   G+ +  R
Sbjct: 87  ARSTQEECEKYNEMKGIIFKAKQQNKRKKEFLKMIFLTTTQT-ESQLRAMIAAGLFRPAR 145

Query: 192 GGV 200
           G +
Sbjct: 146 GAL 148


>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
          Length = 256

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDIN 125
           ++L+ A  Q +  + +LD + NNA +  +DE+++ K +++N
Sbjct: 103 EKLSEAIRQTVKDHSKLDILCNNAGI--IDEKNWPKSVELN 141


>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
          Length = 355

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAAV----LSVDERSF---KKMIDINFTATVNSTLKGL 161
           D+       VLD + ++D +INN+      L+V+       K M+D+NF A V+ T   L
Sbjct: 114 DKHTELVRSVLDHFNKIDILINNSGRSQRGLAVETPGIEVEKAMLDLNFLAVVSLTKAVL 173

Query: 162 DCMGIDKGGRGGVVVNMS 215
             M   K G   +VV  S
Sbjct: 174 PHMIERKNGH--IVVTSS 189


>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNA-----AVLSVDERSF-KKMIDINFTATVNSTLKGLD 164
           + +    + +    RR+D ++NNA      VL     S  ++M ++NF   V  T   + 
Sbjct: 262 ESVTEVLQSIYSAERRIDVLVNNAGVGLIGVLETHTMSLVREMFNVNFFGVVRLTKAVIP 321

Query: 165 CMGIDKGGRGGVVVNMSSL 221
            M   KG   G ++N+ S+
Sbjct: 322 KM---KGNPSGHIINIPSI 337


>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
          Length = 717

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 126 FTATVNSTLKGLDCMGIDKGGRGGVVVNMSSLLALNPSSH 245
           F +T+++ LKG+D   I  GGR    V++  LLA   + H
Sbjct: 598 FQSTIDTILKGIDAYQIRIGGR-MCHVHVDHLLAAGDAEH 636


>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
          Length = 289

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +3

Query: 12  AAAYEQVLDKYRRLDGVINNAAVLSVD---ERSFKKMIDINFTATVNSTL--KGLDCMGI 176
           A A E+++ +  R+D ++NNA  ++     + +F +   I FT  V+       +    +
Sbjct: 104 ALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKI-FTVDVDGAFLCSQIAARQM 162

Query: 177 DKGGRGGVVVNMSSL 221
            K G+GG ++N++S+
Sbjct: 163 VKQGQGGRIINITSV 177


>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAAV--LSVDERSFKKMIDINFTATVNSTLKGLDC-MG 173
           + + A   ++++K  R+D ++NNA +    V E +    I+  F   V   ++  +  + 
Sbjct: 100 ESVKAVVAEIVEKEGRIDVLVNNAGIGLFCVPECATTDAINKVFEPNVYGLMRMTNAVIP 159

Query: 174 IDKGGRGGVVVNMSSLLAL 230
             K  R G VVN+ S+L +
Sbjct: 160 HMKKQRAGHVVNIGSVLGI 178


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 24  EQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKG 158
           E  +  + R+D V+NNA +L   ++S  +M ++++       LKG
Sbjct: 85  ETAIKAFGRIDVVVNNAGILR--DKSILRMSELDWDLVQRVHLKG 127


>SB_25994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 204 RLLHPFLLYQSPCNLDLLK 148
           ++ HP+++  SPCN D  K
Sbjct: 22  KINHPYVIKMSPCNSDTSK 40


>SB_17921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = +3

Query: 3   DQLAAAYEQVLDKYRRLDGVINNAA--VLSVDER----SFKKMIDI--NFTATVN 143
           +Q+ AA ++ + K    D VINNAA   +S  ER    ++K ++DI  N TA VN
Sbjct: 12  EQVKAAVDECVAKSGLPDIVINNAAGNFISPSERLSANAWKTIVDIVLNGTAYVN 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,357
Number of Sequences: 59808
Number of extensions: 108921
Number of successful extensions: 260
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 16,821,457
effective HSP length: 59
effective length of database: 13,292,785
effective search space used: 292441270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)