Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C14
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016668-1|AAB66092.1| 257|Caenorhabditis elegans Dehydrogenase... 31 0.082
U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,... 29 0.58
U49829-4|AAK68350.1| 427|Caenorhabditis elegans Dehydrogenases,... 27 1.8
AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical... 27 1.8
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z66524-4|CAC70103.1| 297|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF181619-1|AAF01208.1| 297|Caenorhabditis elegans putative ribo... 26 3.1
U41031-4|AAA82621.3| 482|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 25 5.4
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 25 7.1
U13876-5|AAA21176.2| 449|Caenorhabditis elegans Mammalian bysti... 25 7.1
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 25 7.1
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 25 9.4
>AF016668-1|AAB66092.1| 257|Caenorhabditis elegans Dehydrogenases,
short chain protein13 protein.
Length = 257
Score = 31.5 bits (68), Expect = 0.082
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +3
Query: 33 LDKYRRLDGVINNAAV-------LSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGR 191
LD++ +LD +++NAAV + V + + K++D+N + T + + ++ GR
Sbjct: 83 LDRFTKLDILVSNAAVNPHYGDLMKVTDSQWDKLLDLNVKSAFELTKEAVP--HLEASGR 140
Query: 192 GGVVVNMSSLLALNP 236
G VV +SS+ +P
Sbjct: 141 GNVVF-VSSVAGYSP 154
>U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,
short chain protein28 protein.
Length = 436
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 33 LDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKG 158
+D + R+D VINNA +L + SF KM ++++ +KG
Sbjct: 85 IDNFGRIDIVINNAGILR--DVSFLKMTELDWDLIFKVHVKG 124
>U49829-4|AAK68350.1| 427|Caenorhabditis elegans Dehydrogenases,
short chain protein29 protein.
Length = 427
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +3
Query: 3 DQLAAAYEQVLDKYRRLDGVINNAAVLS------VDERSFKKMIDINFTATVNS 146
D + +++ D + ++ VI NAA+LS + + +K +D+N T+N+
Sbjct: 103 DNMKKTAKEIEDTFGDVNIVICNAAILSFTSFMEISDELLRKCLDVNIFGTINT 156
>AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical
protein T01G6.10 protein.
Length = 275
Score = 27.1 bits (57), Expect = 1.8
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 24 EQVLDKYRRLDGVINNAAVLSVD-----ERS---FKKMIDINFTATVNSTLKGLDCMGID 179
+ LD + R+D ++NNA VD ++S + K INF A + K + +
Sbjct: 78 QSALDAFGRIDVLVNNAGANVVDGTFNTDQSTELYHKTFQINFEAVIEMVKKTKNHLIES 137
Query: 180 KGGRGGVVVNMSSLLA 227
K G +VN+SS+ A
Sbjct: 138 K----GEIVNVSSVAA 149
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 169 WGLIKEEGVE*SSICLPCWL 228
W I++EG+E C CWL
Sbjct: 706 WATIRQEGMEVLKDCSDCWL 725
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 169 WGLIKEEGVE*SSICLPCWL 228
W I++EG+E C CWL
Sbjct: 706 WATIRQEGMEVLKDCSDCWL 725
>Z66524-4|CAC70103.1| 297|Caenorhabditis elegans Hypothetical
protein T13H5.7 protein.
Length = 297
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 135 TVNSTLKGLDC-MGIDKGGRGGVVVNMSSLLALNP 236
T N+ G+ C +GID+ GRG V+ M A++P
Sbjct: 12 TWNNFGNGIPCVLGIDEAGRGPVLGPMVYAAAISP 46
>AF181619-1|AAF01208.1| 297|Caenorhabditis elegans putative
ribonuclease H2 largesubunit protein.
Length = 297
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 135 TVNSTLKGLDC-MGIDKGGRGGVVVNMSSLLALNP 236
T N+ G+ C +GID+ GRG V+ M A++P
Sbjct: 12 TWNNFGNGIPCVLGIDEAGRGPVLGPMVYAAAISP 46
>U41031-4|AAA82621.3| 482|Caenorhabditis elegans Hypothetical
protein C16B8.4 protein.
Length = 482
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 180 YQSPCNLDLLKYYLPSP*NLYQ 115
Y PCN D YLP+P Y+
Sbjct: 375 YLGPCNKDPTTVYLPAPSTSYE 396
>Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical
protein AH10.1 protein.
Length = 566
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 YEQVLDKYRRLDGVINNAAVLSVD-ERSFKKMIDINFTATVNSTLKGLDCMGIDKG 185
+E++LD R+ N A++ +D E + KK + + TVNS L +G G
Sbjct: 18 HERILDSC-RIHAAANKDAIVFIDAETTTKKKLYRDVEPTVNSLATALVKLGFKPG 72
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 6 QLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKG 185
QL+ ++ +++ +LD ++L + + S K + I T NST L G G
Sbjct: 241 QLSKDFKNTKEEFTKLDSFFKQFSLLRLLKDSISKSLKIRSTTPSNSTKPRLLTSGFLNG 300
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
protein protein12 protein.
Length = 1847
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 51 LDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKG-----LDCMGIDKGGRGGVVVNMS 215
LD +NN+ + S++ + ++ +TA + G LD + + GG++++ S
Sbjct: 1032 LDFSLNNSMIASIEPNALITSSELGYTAITGTVRVGDGHVTLDTVVLRVASLGGIILSAS 1091
Query: 216 S 218
S
Sbjct: 1092 S 1092
>U13876-5|AAA21176.2| 449|Caenorhabditis elegans Mammalian bystin
(adhesion protein)related protein 1 protein.
Length = 449
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 42 YRRLDGVINNAAVLSVDER 98
YR +DGV+N+ L DER
Sbjct: 356 YRAVDGVVNHFIRLKTDER 374
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 172 PMQSRPFKVLFTVAVKFISIIFLKERSS 89
P S PF + +TV V+ I+ FL S
Sbjct: 659 PFLSIPFTIAYTVEVEIIAAYFLSSMDS 686
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 102 KSARRHSKPPRCL*LHLAFDIYLKLAHTRPRVGP 1
K + H +PPR + L FD+ K+ + + P
Sbjct: 419 KLTQNHGEPPRSIKPELRFDLIRKVGESAKLLSP 452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,072,890
Number of Sequences: 27780
Number of extensions: 83580
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -