Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C14
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   5.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   6.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    19   6.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   9.1  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 103 KERSSTLKTAALFMTPSSLRYLSKTCSYA 17
           KERS   +       P  +  LS +C+Y+
Sbjct: 286 KERSRDRRERERSKEPKIISSLSNSCNYS 314


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 INFTATVNSTLKGLDCMGI 176
           ++FT TV++    +DC  I
Sbjct: 108 VSFTTTVSARFWLMDCRNI 126


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 54  LAFDIYLKLAHTRPR 10
           L +++Y+K +HT  +
Sbjct: 62  LEYELYIKYSHTHEK 76


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 192 PFLLYQSPCNLDL 154
           P  +YQS C +D+
Sbjct: 143 PPAIYQSSCTIDV 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,896
Number of Sequences: 438
Number of extensions: 1297
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)