Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C13
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   0.62 
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   5.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.7  

>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 210 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 97
           L++ Q +++G SYVL +DP      F +  NG  R  T
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 243 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 347
           P  R      V W MP  + +       N+HW AP
Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +1

Query: 226 DNREKHRMRGGHPLLLY-------LGICP 291
           DNR+   +R G P++LY       +G+CP
Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,528
Number of Sequences: 5004
Number of extensions: 56435
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)