Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C13
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0379 + 43177978-43178572,43178643-43178674                       34   0.090
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    33   0.12 
01_06_1092 + 34469732-34470118                                         32   0.36 
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404...    31   0.48 
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566...    29   3.4  
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979     28   4.5  
07_03_0821 + 21760655-21760912,21761158-21761328,21761850-217620...    28   5.9  
12_01_0415 + 3292576-3293727                                           27   7.8  
09_04_0013 - 13726386-13726848,13726932-13727140,13727223-137273...    27   7.8  

>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 230 LSYCCVSCPFRSKIH-TGSRTSYHLTRRRDYRFFRKYITA 114
           L Y C  C FR+    T S+T +HL  R +YR++  Y+ A
Sbjct: 157 LFYSCACCAFRNTATATSSKTIFHLHPRWEYRWYLLYLCA 196


>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -3

Query: 465 PSLPQTGSFSRVHIHGCKLASLAAWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 304
           PS      FS V I+ C L  L A +S S    +DG++F+ +   H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +2

Query: 407 ASLHPCICTREKDPVCGSDGVTY 475
           A L P  C R  DPVCG+DGVTY
Sbjct: 53  AQLCPVRCFRP-DPVCGADGVTY 74


>03_03_0156 +
           14939355-14939435,14939559-14939624,14940331-14940414,
           14940796-14940875,14941313-14941358,14941456-14941566,
           14942224-14942290,14942615-14942630,14942871-14942931,
           14943015-14943145,14943243-14943360,14944053-14944176,
           14944517-14944618,14944717-14944785,14946250-14946329
          Length = 411

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 329 CSLECTQKIIPSLKME-HDGECQAAKLASLHPCICTREKDP 448
           CS E +Q +I  LK E H    QAA       C+C+ E DP
Sbjct: 326 CSSEASQALIEHLKDEYHQYMLQAAIFCEALSCLCSPEPDP 366


>03_05_0936 -
           28955486-28955683,28956320-28956424,28956550-28956693,
           28957078-28957356,28957480-28957587,28958288-28958567,
           28958724-28960029,28961301-28962342
          Length = 1153

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 167 YHLTRRRDYRFFRKYITAVAELLPSIL 87
           YHL R  DY ++R+++  V ELL + L
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELLKANL 890


>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
          Length = 158

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 308 R*SHRRGHIPRYSSRGCPPRMRCFSRLSYCCVSCPFRSKIHTGSRTSYHLTRRRD 144
           R S RR  +   S+    P +  + RL  CC++    S +  G     H  +RRD
Sbjct: 43  RESRRRCALGGASAASESPPLHLYQRLPKCCITSHRCSTLRAGYPADLHGQKRRD 97


>07_03_0821 +
           21760655-21760912,21761158-21761328,21761850-21762026,
           21762165-21762242
          Length = 227

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 302 SNGKTYANKCSLECTQKIIPSLKMEHDGECQAAKLAS 412
           S G+ +  +CS  C++  +P+    + G+ +   L S
Sbjct: 117 SPGEAWEKQCSASCSESFVPTENAHYQGQVELISLGS 153


>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 117 GGGRAVTEYISAAAIRRIPSLFILC 43
           GGG    E +S A IRR+   FILC
Sbjct: 38  GGGGGGEEILSVAWIRRLLEAFILC 62


>09_04_0013 -
           13726386-13726848,13726932-13727140,13727223-13727323,
           13727515-13727740
          Length = 332

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 456 PQTGSFSRVHIHGCKLASLAAWHSPSC 376
           P    F+ + +HGC +  LA  HS SC
Sbjct: 232 PFVAEFADLVLHGCAVDPLAVEHSASC 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,884
Number of Sequences: 37544
Number of extensions: 397096
Number of successful extensions: 1061
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)