Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C13
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 33 0.13
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 31 0.53
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 31 0.70
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 30 0.93
At3g32904.1 68416.m04164 hypothetical protein 30 1.2
At3g17750.1 68416.m02265 protein kinase family protein contains ... 30 1.2
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 1.6
At5g55960.1 68418.m06979 expressed protein 29 2.8
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 2.8
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 2.8
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 2.8
At5g56050.1 68418.m06993 hypothetical protein 28 5.0
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 28 5.0
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 134 KIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSNGK 313
K+Y+ + S G+ YEN C F C+ + + T C + + C P+ S K
Sbjct: 83 KVYTHIFTSSGRIYENTCHF-CQ---SKLEFLFARCTICNLNVDIECLFALPPLTISEPK 138
Query: 314 TYANKCSL 337
+ + SL
Sbjct: 139 HHKHSLSL 146
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 92 YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFYC 199
Y + PP L +Y+ C DG + + + CEF+C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 30.7 bits (66), Expect = 0.70
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 240 TPH-ARWASPATVPWN-MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARQLNWRV 413
TPH A SP T +PP V T + P VHW+ K+ Y+ W + N+R+
Sbjct: 270 TPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 30.3 bits (65), Expect = 0.93
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Frame = +2
Query: 119 LCICGKIYSPVCGSDGKTYENPCEFYCEKDKT----HSNMTIVKNTACE-----VGIPCY 271
LC CGK P + + C CE+ + H + + C V C+
Sbjct: 165 LCYCGKEEDPPADNPW-ILPHSCGEVCERPLSNNCGHCCLLLCHPGPCASCPKLVKAKCF 223
Query: 272 CT-LEYAPVCGSNGKTYANKCSLECTQKIIPSLKMEHDGECQAAKLASLHPCICTREKD 445
C +E CG + + C I ++ HDGEC + +++ C C + K+
Sbjct: 224 CGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSCGKVKE 282
>At3g32904.1 68416.m04164 hypothetical protein
Length = 330
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 252 RWASPATVP-WNMPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARQLN 404
+W +P T P WN P +V + PT W P + +W+ A QL+
Sbjct: 276 QWGTPPTAPQWNSPSNVPQWT-IPPTTPQWGTPSSMP---QWSSSPTAPQLS 323
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 167 YHLTRRRDYRFFRKYITAVAELLPSIL 87
YHL R DY +FR+++ V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +2
Query: 356 IPSLKMEHD---GE-CQAAKLASLHPCICTREKDPVCGSDGVTYSNLCLLKCASLSKPSL 523
+PS K+ + GE C+ + P C R DPVCG D VTY C CA +
Sbjct: 47 LPSEKINGEKNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTY--WC--GCADALCHGV 101
Query: 524 SIEHTGPCD 550
+ G CD
Sbjct: 102 RVVKQGACD 110
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 146 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 259
PVCG D TY C D + +VK AC+VG
Sbjct: 80 PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 341 IPVNICWRKFFR-*SHRRGHIPRYSSRGCPPR 249
IP N+ W++ FR S R+ P SS PPR
Sbjct: 14 IPTNLAWQEMFRSASSRKPQDPPSSSSSSPPR 45
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 443 DPVCGSDGVTY 475
DPVCG+DGVTY
Sbjct: 52 DPVCGTDGVTY 62
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 146 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 259
PVCG+DG TY C D +VK AC+ G
Sbjct: 53 PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 167 YHLTRRRDYRFFRKYITAVAELLPSIL 87
YHL R DY ++R+++ V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 167 YHLTRRRDYRFFRKYITAVAELLPSIL 87
YHL R DY ++R+++ V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 237 KTPHARWASPATVPWNMPP-SVALTEKLTP 323
+TP ++W SP PW P S T TP
Sbjct: 21 ETPSSKWYSPIYTPWRTTPRSTQSTPTTTP 50
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 170 TYENPCEFYCEKDKTHSNMTIVK---NTACEVGIPCYCTLEYAPVCGSNGKTYANKCSLE 340
TY + +C +D + K N C+ CY TL Y G + +T + C
Sbjct: 294 TYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKES 353
Query: 341 CTQKIIPSLKM 373
+ +PS +
Sbjct: 354 MEKNWVPSFSI 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,115
Number of Sequences: 28952
Number of extensions: 306668
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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