Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C12
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0893 + 22327485-22327671,22327756-22328627                       27   6.8  
08_02_0482 - 17643603-17643955,17644024-17646604                       27   6.8  
06_01_1013 - 7931756-7935109                                           27   6.8  
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278...    27   9.0  
01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880     27   9.0  

>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 375 GSQIKDRCQIRGNSSSKHQLPLLLLPDPASVE*Q 274
           G+++  R Q R  +  + + P LL+PDP +V+ Q
Sbjct: 305 GAELLRRVQQRRRADERGRQPALLVPDPQAVQRQ 338


>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 359 TVARSGATAAANINYLYYYFRTQRRWSNNDIA 264
           TVA +G        +  + +R+QRRWS  D A
Sbjct: 611 TVAVAGVILLLGAAWFAHRYRSQRRWSTEDAA 642


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 250 CMRTCPVTPEFNPVCGSDNQTYSNPGRLTCAQACG 146
           C R+C  +P   P    D  + S  GR +C Q CG
Sbjct: 655 CNRSCHPSPCDPPPANGDASS-STGGRASCGQVCG 688


>06_03_1223 -
           28526869-28527192,28527515-28527634,28527742-28527816,
           28527905-28527964,28528271-28528370,28528664-28529148,
           28529243-28529437,28529532-28529762,28529851-28529967,
           28530247-28530330,28530755-28530893,28530939-28531090
          Length = 693

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 134 LKQTSAV-PTCHSCDELILIRYNLFNTL 54
           ++Q S V PTC +C E +    NL+NTL
Sbjct: 471 VEQLSKVDPTCMTCAERLAFWINLYNTL 498


>01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880
          Length = 186

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 232 VTPEFNPVCGSDNQTYS 182
           + PEFNP+ GSD   YS
Sbjct: 21  LVPEFNPIIGSDAARYS 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,949
Number of Sequences: 37544
Number of extensions: 211653
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)