Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C11
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   4.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.5  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 121 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 273
           S+ SS             P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 71 RVDTNVF*LQNFFFFWRRQKH 9
          ++    F + N+FFFW++ K+
Sbjct: 3  KISLQFFFVDNYFFFWKQSKY 23


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 258 LVKVKL-VPYGKSTHDKVNEKW 320
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +1

Query: 121 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARM 300
           S VSS               +  P++ +  SSS  S + S  +   S+ +S      +  
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429

Query: 301 TR*MKSGLSRAITDLTN 351
           +R      S +++ L++
Sbjct: 430 SRSSSHSSSHSLSSLSS 446


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 207 KKFITTQLAPVWRDFRGLVKVKLVPY 284
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +3

Query: 318 WTFTCHHGPDE---CYGNKMQACILKDRSLQDTEKMELV 425
           W  TC   P       G     C++ D S+ D + +ELV
Sbjct: 65  WIMTCAFSPSTKSIAAGGLNNFCVVYDTSVPDADPVELV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,906
Number of Sequences: 5004
Number of extensions: 41119
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)