Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C11
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 64 9e-11
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 61 5e-10
03_02_0673 - 10328994-10329281 48 6e-06
05_01_0258 + 1984666-1984878,1985019-1985852 30 1.0
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 29 2.3
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 28 4.1
07_03_0863 - 22087178-22087474,22087614-22087770,22087851-220880... 28 5.4
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 9.5
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 63.7 bits (148), Expect = 9e-11
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +3
Query: 96 LLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVK 272
LL+ A+ ++ + KK KV +A+YYESLCP S F+ LA V+RD V +
Sbjct: 11 LLLAAILLLAAGAVEGKKGG--KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLS 68
Query: 273 LVPYGKSTHDKVNE-KWTFTCHHGPDECYGNKMQACIL 383
LVPYG + +V + K + HG +EC+ N ++AC +
Sbjct: 69 LVPYGNA---RVKDGKISCQVEHGSEECFLNTVEACAI 103
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 171 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPD 347
++VYYE+LCP F+ LA ++RD +V ++LVP+G + +V+ + TC HG +
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57
Query: 348 ECYGNKMQACILK 386
EC N ++AC+++
Sbjct: 58 ECQLNAIEACVIR 70
>03_02_0673 - 10328994-10329281
Length = 95
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +3
Query: 81 KMKLLLLICAVTMICGVLAKN---KKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRD- 248
++ L+ L+ A ++ G L +KV +A+YYE+LCP +FI LA ++ D
Sbjct: 8 RLLLVALVSAAAVVAGALLPGCAAAAAAGEKVPLALYYETLCPYCSRFIVNHLAGIFEDG 67
Query: 249 FRGLVKVKLVPYGKS 293
V ++LVPYG +
Sbjct: 68 IVDAVDLRLVPYGNA 82
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 90 LLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 257
++ L+C V ++ A D+++K+ YYE C D +K + + + +D RG
Sbjct: 1 MVKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Frame = +3
Query: 180 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKLVPYGKSTHDKVNEKWTFTC- 332
+YE CP ++ + + P W R +V +P+ H+K ++ W
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175
Query: 333 -----HHGPDECYGNKMQACILKDRSLQDTEKMELVI 428
HHG D+ N KD ++ + + V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 281 RHQLNLDESSEVPP---DGRQLCRDELLTVRAEG 189
RH+ D SSE PP DG + RDE T R G
Sbjct: 175 RHRCRADPSSESPPATADGIYVPRDEAFTERRAG 208
>07_03_0863 -
22087178-22087474,22087614-22087770,22087851-22088088,
22088181-22088352
Length = 287
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 432 LMSQASPDKSLDTCLISSEQTKRI 503
L+ + P+KSLDT L +EQ KR+
Sbjct: 42 LVYEYMPNKSLDTLLFDTEQRKRL 65
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 36 KVL*LKNIRVHSYKYKMKLLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLC 197
K+L + NI+ +Y +K + V I G + DD ++KI+ Y SLC
Sbjct: 318 KILDVNNIKSVPQQYILKRWTIDAKVLHISG---NSNMHDDPRIKISDRYSSLC 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,985
Number of Sequences: 37544
Number of extensions: 281586
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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