Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C11
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   2e-12
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  66   2e-11
SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)             30   1.4  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   3.2  
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   4.2  
SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  27   7.3  
SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)                  27   7.3  
SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10)                  27   9.7  

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/95 (31%), Positives = 49/95 (51%)
 Frame = +3

Query: 99  LICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKLV 278
           L  AV ++    ++ +      V I++YYES+C   +  I  QL P ++    ++ + LV
Sbjct: 5   LFSAVLLLGIGASQTRPMTASPVAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLV 64

Query: 279 PYGKSTHDKVNEKWTFTCHHGPDECYGNKMQACIL 383
           PYG +   +   KW F C HG  EC GN ++ C +
Sbjct: 65  PYGNAQEYRYGNKWVFNCQHGQGECEGNIIEVCAI 99


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/99 (31%), Positives = 52/99 (52%)
 Frame = +3

Query: 81  KMKLLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPVWRDFRGL 260
           +M  +LL   +    G+  + KK +  KVK+AVYY S  P+ ++F+  QL P       +
Sbjct: 2   RMYAILLASMIAFASGLPKQTKKAE--KVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNI 59

Query: 261 VKVKLVPYGKSTHDKVNEKWTFTCHHGPDECYGNKMQAC 377
           + + +VP+G     K    + + C +G +EC  N +QAC
Sbjct: 60  LDISMVPFGDGKEIKAKSGFQYYCTNGAEECLENLIQAC 98


>SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)
          Length = 439

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 27  KKEKVL*LKNIRVHSYKYKMKLLLLICAVTMICGVLAKNKKTD 155
           KK  VL    I V +    + LLLL+C + +IC +  K KK +
Sbjct: 147 KKPNVLSETVIIVITCSVSLILLLLLCVIILICKIKKKKKKNE 189


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 183  YESLCPDSKKFITTQLAPVWRDFRGLVKVKLVP 281
            +  + PD+ + I  +L P++ D+  ++KVKL P
Sbjct: 3409 FRVIAPDTIRDINDELVPLFDDYHKVMKVKLSP 3441


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 380 PQGP-QPPGYGEDGTGYLLDVSGEPGQIFGY 469
           P  P Q PGY     GY   V G P Q+ GY
Sbjct: 866 PGNPAQAPGYPAQAPGYPAQVPGYPAQVPGY 896


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 365 DASMHP-QGPQPPGYGEDGTGYLLDVSGEPGQIFGYVPN 478
           DA+  P Q P PP Y     GY  D  G P Q  G  P+
Sbjct: 845 DAAFPPAQAPYPPPYPTPAGGYPPDQGGYPLQTMGPPPD 883


>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 187 NPSARTVRSSSRHSWRPSGGT 249
           NP AR +R  SRH+W  + GT
Sbjct: 429 NPLARRLREYSRHTWSQTKGT 449


>SB_55809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 267 VKLVPYGKST-HDKVN--EKWTFTCHHGPDECYGNK 365
           V+ + YGK+T HD  N       TCH   D C+ NK
Sbjct: 108 VRNIHYGKTTCHDGKNTCHDDKVTCHDNKDTCHENK 143


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 380 PQG----PQPPGYGEDGTGYLLDVSGEPGQIFGYVPNFK*TNKTNLT 508
           PQG    PQ PGY     GY   V+ +PG        F+  NK  +T
Sbjct: 264 PQGGYPPPQQPGYNPQQPGYGAPVAQQPGYPPPAFTGFETNNKYKIT 310


>SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)
          Length = 237

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +3

Query: 96  LLICAVTMICGVLA---KNKKTDDQKVKIAVYYESLCP----DSKKFITTQLAPVWRDFR 254
           +L+CAV ++C V     K++K   +KVK       L P    D+ K    + +PV ++F+
Sbjct: 4   VLVCAVLVLCLVAVKANKDEKEASEKVKKEANLRPLSPENHADALKDAIARKSPVLKNFK 63

Query: 255 GLVK 266
             +K
Sbjct: 64  KEIK 67


>SB_6678| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-10)
          Length = 371

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 84  MKLLLLICAVTMICGVLAKNKKTDDQKVKIAVYYESLCPDSKKFITTQLAPV--WR 245
           + LLLL+C V   C ++ +     D +VK+A  YE  C  +  ++ + + P   WR
Sbjct: 264 VSLLLLLCYVPFFCAMITRVVVGYDTRVKVA--YE--CAATLVYMNSTINPALYWR 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,694,602
Number of Sequences: 59808
Number of extensions: 327377
Number of successful extensions: 859
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)