Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C10
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    56   3e-10
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 55.6 bits (128), Expect = 3e-10
 Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
 Frame = +3

Query: 252 LSIKDIQENDAGWYQCQVLVSI-SSRITAEVELQVR-RPPXISDNSTRSIVASEDESVRM 425
           L I+ +++ D G YQC +     S+  TAE++L  R  PP I        V     SV +
Sbjct: 375 LRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETV-QPGNSVFL 433

Query: 426 ECYAGGFPQPKISW----RRENNAILPTGGS--IYRGNI---LKITSVHKEDRGTYYCVA 578
           +C A G P P+I+W    RR +N+     G      G++   L IT++H  D G Y CVA
Sbjct: 434 KCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGGLYRCVA 493

Query: 579 DNGVG 593
            + VG
Sbjct: 494 SSKVG 498



 Score = 55.6 bits (128), Expect = 3e-10
 Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
 Frame = +3

Query: 249  TLSIKDIQENDAGWYQCQVLVSISSRITA-EVELQVRRPPX-ISDNSTRSIVASEDESVR 422
            TLSI ++Q    G Y C  L S S+ +T     L +  PP  I + + ++     D +V 
Sbjct: 662  TLSIDNVQSTHVGNYTC--LASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAV- 718

Query: 423  MECYAGGFPQPKISWRRENNA-------ILPTGGSI-YRGNILKITSVHKEDRGTYYCVA 578
             EC A GFP+P ++W+R             P    I      L I ++ K + G Y C A
Sbjct: 719  -ECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLCEA 777

Query: 579  DNGVGHG 599
             NG+G G
Sbjct: 778  VNGIGSG 784



 Score = 52.8 bits (121), Expect = 2e-09
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
 Frame = +3

Query: 249  TLSIKDIQENDAGWYQCQVLVSISSRITAEVELQVRRPPXISDNSTRSIVASEDESVRME 428
            TL+I +IQ+ + G+Y C+ +  I S ++A +++ V+ PP   D   R+  +   +   ++
Sbjct: 759  TLTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQF-DIKLRNQTSRRGDPAVLQ 817

Query: 429  CYAGGFPQPKISWRRENNAILPTGGSIY--RGNI--------LKITSVHKEDRGTYYCVA 578
            C A G     I W   N  + P G + Y  R  I        L I    + D   + CVA
Sbjct: 818  CEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSALFTCVA 877

Query: 579  DNGVG 593
             N  G
Sbjct: 878  TNAFG 882



 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
 Frame = +3

Query: 252 LSIKDIQENDAGWYQCQVLVSISSRITAEVELQVRRPPXISDNSTRSIVASEDESVRMEC 431
           L+I  I  ND G Y+C     + S       + V   P +     ++IVA    ++ + C
Sbjct: 476 LNITAIHTNDGGLYRCVASSKVGSA-DHSARINVYGLPFVRSMEKQAIVAGG--TLIVHC 532

Query: 432 YAGGFPQPKISWRRENNAI-LPTGGSIYRGNILKITSVHK-EDRGTYYCVADNGVGHGS 602
              G P   + W R+   + +     ++    L I +V +  D+ TY CVA N  G+ +
Sbjct: 533 PFAGHPVDSVVWERDGRQLPINRKQKVFINGTLIIENVERASDQATYDCVAKNSQGYSA 591



 Score = 37.5 bits (83), Expect = 9e-05
 Identities = 31/112 (27%), Positives = 45/112 (40%)
 Frame = +3

Query: 249 TLSIKDIQENDAGWYQCQVLVSISSRITAEVELQVRRPPXISDNSTRSIVASEDESVRME 428
           TL I++ +  D+G Y C V  S+    + E  L V  P           +          
Sbjct: 291 TLIIREAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLKAKIEPQVQTI-DFGRPATFT 348

Query: 429 CYAGGFPQPKISWRRENNAILPTGGSIYRGNILKITSVHKEDRGTYYCVADN 584
           C   G P   ISW ++ + I       +   +L+I SV KED+G Y C   N
Sbjct: 349 CNFEGNPIKTISWLKDGHPI------DHNEAVLRIESVRKEDKGMYQCFIRN 394



 Score = 34.3 bits (75), Expect = 8e-04
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
 Frame = +3

Query: 306 LVSISSRITAEVELQVRRPPXISDNSTRSIVASEDESVRMECYAGGFPQPKISWRR---- 473
           L +   R+     +  + P   +D           ++V + C A GFP P   W +    
Sbjct: 213 LSATKGRLVITEPVGTKAPAFSTDIKVLGYQRHSKQNVALLCPAQGFPSPSFRWYKFVEG 272

Query: 474 --ENNAILPTGGSIYRGNILKITSVHKEDRGTYYCVADNGVGHGSAQ 608
                A+            L I     ED G Y CV +N VG  S +
Sbjct: 273 TTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVVNNSVGGESVE 319



 Score = 31.1 bits (67), Expect = 0.008
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 411  ESVRMECYAGGFPQPKISWRRENNAILPTGGSIYR--GNILKITSVHKEDRGTYYCVADN 584
            E V + C A G P P I+W+ +      T   I +     L I  V + + G Y C  +N
Sbjct: 1322 EDVTLPCLAVGLPPPVITWKIK-GVQFTTSDKIRQQPDGSLFIRDVSRNNAGEYSCHVEN 1380

Query: 585  GVGHGS 602
              G  S
Sbjct: 1381 DYGQDS 1386



 Score = 25.0 bits (52), Expect = 0.50
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 249  TLSIKDIQENDAGWYQCQV 305
            +L I+D+  N+AG Y C V
Sbjct: 1360 SLFIRDVSRNNAGEYSCHV 1378



 Score = 24.6 bits (51), Expect = 0.66
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
 Frame = +3

Query: 423 MECYAGGFPQPKISW-RRENNAILPTGG---SIYRGNIL----KITSVHKEDRG-TYYCV 575
           +EC A G P P I W R +  A+    G    +  GN++    +     +E     Y C+
Sbjct: 43  VECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEVHAQVYVCL 102

Query: 576 ADNGVG 593
           A N VG
Sbjct: 103 AKNSVG 108



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 90  LDCSVHYSQDFPVIWVKYD 146
           ++CS H +    +IWV+ D
Sbjct: 43  VECSAHGNPTPDIIWVRSD 61


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 492 VISHCFRDATRSSAGGSHQRSIPF 421
           V++H   D+T     G HQ++ P+
Sbjct: 122 VVNHLSSDSTTIHWHGHHQKNSPY 145


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 458 LRLGEATSVAFHSHALIFT 402
           L LG+ +SV  H H +I++
Sbjct: 440 LWLGDPSSVLSHGHRVIYS 458


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,741
Number of Sequences: 336
Number of extensions: 3338
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)