Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C10
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    30   0.30 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.70 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   1.6  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   1.6  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   5.0  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   8.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   8.7  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.7  

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
 Frame = +3

Query: 156  TLESIPLSSNAGLIIKDSRFSLRFDDATATFTLSIKDIQEN-DAGWYQCQVLVSISSRIT 332
            ++E +PL ++    I D    L FD +T +  L I D + N DA      V+   SSR +
Sbjct: 923  SMEQVPLENHREFEISDRVSELSFDSSTGS-VLEIADTRRNQDAPEKHVPVIEIQSSRPS 981

Query: 333  AEVELQVRRPPXISDNSTRSIVASEDESVRMECYAGGFPQPK 458
             E   Q      + D+ +++   +E++  RM+ +A  FP  K
Sbjct: 982  LEKTDQSTPVELLIDSHSQN-SQNEEKRSRMKFWA--FPHHK 1020


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 57   EQIRDIGGQVDLDCSVHYSQDFPVIWVKYDRLKTLESIPLSSNAGLIIKDSRFSLRFDDA 236
            EQ+ D+  ++ L   ++ SQ FP I  K D L+    +    NA L+ +    +L F + 
Sbjct: 1088 EQVEDLNKEIALKAGINESQPFP-ISEKEDPLRQEVYVLKKQNAMLLTQLQSSNLNFAEI 1146

Query: 237  TA 242
            T+
Sbjct: 1147 TS 1148


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 477 NNAILPTGGSIYRGNILKITSVHKEDRGTYYCVADNGV 590
           +NAI    GS ++GN LK+   H  +R  Y    +NGV
Sbjct: 80  DNAIASLNGSSFQGNTLKVEYTHIVER--YKNKLENGV 115


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/79 (21%), Positives = 37/79 (46%)
 Frame = +3

Query: 228 DDATATFTLSIKDIQENDAGWYQCQVLVSISSRITAEVELQVRRPPXISDNSTRSIVASE 407
           +DA  T +L +  +  N A WY     V + S++ A++ + +        ++  +++AS 
Sbjct: 17  EDANDTPSLLVVILDANPASWYSLSKKVPV-SKVLADITVFLNAHLAFHHDNRVAVLASH 75

Query: 408 DESVRMECYAGGFPQPKIS 464
            + V    Y    P+ K++
Sbjct: 76  SDKVEY-LYPSIAPEQKVA 93


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 485 RIVFATPRDLRLGEATSVAFHSHALIFTGDDRSGRVVRYXRRASNLK 345
           +IV   P+   LG    VA +  A  +TG    GRV ++ R     K
Sbjct: 40  KIVEQIPKWKHLGNHDGVALYEKAPAYTGHTWYGRVSKHTRSLKTFK 86


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 253 NVNVAVASSKRRENLESLMMSPALLDNGIDSNVFRRSYFTQ 131
           N  VA+         +S++M+ A +D G+  ++F R+Y  Q
Sbjct: 811 NAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQ 851


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 159 LESIPLSSNAGLIIKDSRFSLRFDDATATFTLSIKDIQENDAGWYQCQVLVSISSRITAE 338
           L S+ LS+ A  +    R  L  D +  T  ++ K  +E   G  Q +VLVS       +
Sbjct: 155 LGSVYLSTLANRLEPLEREVLVTDPSNPTKLVAFKQRKERYPGELQWEVLVSQDEERLRK 214

Query: 339 VELQVRRP 362
           + L +R P
Sbjct: 215 LNLPLREP 222


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 417 VRMECYAGGFPQPKISWRRENNAILPTGGSIYRGNILKITSV 542
           VR++CY  G P+ ++     +  +    G   +GN +++  V
Sbjct: 197 VRLKCYLSGMPELRLG--LNDKVLFEAAGRTIKGNTVEMEDV 236


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 87  DLDCSVHYSQDFPVIWVKYDRLKTLESIPLSSNAGLIIKDSRFSLRFD--DATATFTLSI 260
           DLD +  Y     V W  +   + ++   + S + L  KD  +SL  +  +A +  ++S 
Sbjct: 495 DLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISR 554

Query: 261 KDIQENDAGWYQCQVL 308
           K +      W+ C ++
Sbjct: 555 KLLVSMMKEWFLCVIV 570


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 360 PPXISDNSTRSIVASEDESVRMECY 434
           PP ++D  + SI+ +  +S+R  C+
Sbjct: 294 PPSLADRESLSILVNYCKSIRFRCF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,168
Number of Sequences: 5004
Number of extensions: 57247
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)