Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C10
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    29   2.9  
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    27   8.8  
04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380           27   8.8  

>06_01_1159 -
           9852316-9852441,9852743-9852838,9852912-9852977,
           9853091-9853180,9853262-9853373,9853515-9853598,
           9853864-9853940,9854823-9854873,9854924-9855031,
           9855703-9855774,9856952-9857011,9857808-9857876,
           9858005-9858088,9858212-9858295,9859106-9859198,
           9859930-9860030,9861155-9861264,9863058-9863104,
           9863693-9863778,9863940-9864012,9864454-9864540,
           9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -1

Query: 316 IDTSTWHWYQPASFSCISLMDNVNVAVASSKRRENLESLMMSPALLDNGIDSNVFRRSYF 137
           I T  +HWYQ A   C+ L   V   +  +      E L  + A +    D+ +   S F
Sbjct: 612 IRTDGFHWYQSARGQCVFLCSRVRGGIEEALACLACEQLSAAQATIIAAHDNRIVANSIF 671


>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/74 (22%), Positives = 29/74 (39%)
 Frame = +3

Query: 198 IKDSRFSLRFDDATATFTLSIKDIQENDAGWYQCQVLVSISSRITAEVELQVRRPPXISD 377
           +K  R S+   D  AT   S+  +  + +            S  + E  +   + P +SD
Sbjct: 44  LKFRRASIPEKDTDATNASSVSPVSSSSSWRRDSSCTKGEGSMDSQEPRVDAEQKPVLSD 103

Query: 378 NSTRSIVASEDESV 419
           N     + S+DE V
Sbjct: 104 NPEEQTIPSKDEKV 117


>04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380
          Length = 390

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 198 IKDSRFSLRFDDATATFTLSIKDIQENDAGWYQ 296
           I  +RF   FD  T+T   S+ +++E +  W+Q
Sbjct: 234 ISGTRFGSDFDKTTSTLIGSLINVRELNVSWFQ 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,638
Number of Sequences: 37544
Number of extensions: 412442
Number of successful extensions: 1124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)