Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C10
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55790.1 68414.m06388 hypothetical protein                          29   1.8  
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    29   2.4  
At5g06310.1 68418.m00707 expressed protein similar to unknown pr...    28   4.2  
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    28   5.6  
At1g44180.1 68414.m05103 aminoacylase, putative / N-acyl-L-amino...    28   5.6  
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    27   7.4  
At2g04940.1 68415.m00516 scramblase-related weak similarity to P...    27   7.4  
At1g23700.1 68414.m02992 protein kinase family protein contains ...    27   7.4  
At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.7  

>At1g55790.1 68414.m06388 hypothetical protein
          Length = 414

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 283 ASFSCISLMDNVNVAVASSKR-RENLESLMMSPALLDNGIDS 161
           AS  C S +D+ +V V   K+ R NL++L    ALL +G+D+
Sbjct: 51  ASNICASSLDSYDVVVRKYKKARSNLKTLKRLGALLLHGVDA 92


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 337 KWSFRFDAR---RXYLTTRPDRSSPVKMRACEWNATLVASPSRRSRGVAKTMRYYP 495
           KW    ++R   R  ++  PD+   + +  C W      SP ++S+ V K ++Y P
Sbjct: 199 KWDVMVNSRNTIRTCVSPTPDKDLDLFL-LCRWICFSTGSPKKQSKRVMKKLKYRP 253


>At5g06310.1 68418.m00707 expressed protein similar to unknown
           protein (gb|AAD29059.1)
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 198 IKDSRFSLRFDDATATFTLSIKDIQENDAGWYQCQVL 308
           +++   + +F+D +  FT S+KDI+E +     CQ++
Sbjct: 139 LREWMITYKFEDGSCCFT-SLKDIKEGECSNLSCQIV 174


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
            similar to RNA-directed RNA polymerase [Lycopersicon
            esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 207  SRFSLRFDDATATFTLSIKDIQENDAGWYQ 296
            +R + R+ D     TLS+KD+ +   GW++
Sbjct: 1038 ARDNRRYGDMKDRITLSVKDLHKEAMGWFE 1067


>At1g44180.1 68414.m05103 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase,
           ACY-1) [Homo sapiens] SWISS-PROT:Q03154
          Length = 435

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 12  SVSPQRTPTISYITQEQIRDIGGQVDLDCSVHY 110
           S SP RT  ISY+ +E+I   GG +    S  +
Sbjct: 151 SFSPLRTIHISYVPEEEIGGFGGMMKFAASSEF 183


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 WWLPPAEDLVASRKQCDITHRRFHL 511
           WW PP      S KQ D+  +++H+
Sbjct: 61  WWKPPLHVRKMSTKQMDLIRKQWHI 85


>At2g04940.1 68415.m00516 scramblase-related weak similarity to
           Phospholipid scramblase 1 (PL scramblase 1) (Ca(2
           )-dependent phospholipid scramblase 1)
           (Transplantability associated protein 1) (TRA1) (NOR1)
           (Swiss-Prot:Q9JJ00) [Mus musculus]; weak similarity to
           Phospholipid scramblase 4 (PL scramblase 4) (Ca(2
           )-dependent phospholipid scramblase 4)
           (Swiss-Prot:Q9NRQ2) [Homo sapiens]
          Length = 392

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 437 WWLPPAEDLVASRKQCDITHRRFHLQRKHFEDHLSS 544
           WWL  +       ++  + HRR+HL R+ ++ +L +
Sbjct: 247 WWLTSSIYAEIDGEEIGVVHRRWHLWRRIYDLYLGN 282


>At1g23700.1 68414.m02992 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 473

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 247 NVAVASSKRRENLESLMMSPALLDNGI 167
           N+ + +  +REN+E+L+  PA+L N +
Sbjct: 346 NILIQNDIQRENVEALLTEPAILVNPV 372


>At4g02940.1 68417.m00401 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to A. thaliana hypothetical
           protein T13L16.2, GenBank accession number 2708738;
           contains Pfam domain PF03171 2OG-Fe(II) oxygenase
           superfamily
          Length = 569

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 342 ELQVRRPPXISDNSTRSIVASEDESVRMECYAG 440
           +L+ ++    ++   + +VA+E+E V+ EC+ G
Sbjct: 127 DLKQKKTEEEAEEDLKEVVATEEEEVKKECFNG 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,975
Number of Sequences: 28952
Number of extensions: 314877
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)