Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C09
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 32 0.48
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_55137| Best HMM Match : hATC (HMM E-Value=0.059) 31 1.1
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6) 31 1.1
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68) 29 4.4
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10) 29 4.4
SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7) 28 7.7
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024) 28 7.7
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 28 7.7
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024) 28 7.7
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 28 7.7
SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 196 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 375
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 376 YSQ 384
Y Q
Sbjct: 240 YGQ 242
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +2
Query: 158 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSALKS 337
+L HST T S L T T +++++T + TLTH +IT S I L
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 338 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 448
+ L+ +HS + + + + +TH+T
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 236 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 403
++++ T + +TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +2
Query: 125 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 292
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 293 SLILKRNFISSALKSMMLSLRN*SHS 370
S + S L ++ +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 122 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 295
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 296 LILKRNFISSALKSMMLSLRN*SH 367
+ S + L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 137 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 229
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_55137| Best HMM Match : hATC (HMM E-Value=0.059)
Length = 619
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ M ++LT S +GQ I +K++++RI N+L
Sbjct: 148 RSLLEKMGQRLTASAHLGQYITIVLKQEVERIKNEL 183
>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
Length = 538
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ M ++LT S +GQ I +K++++RI N+L
Sbjct: 148 RSLLEKMGQRLTASAHLGQYITIVLKQEVERIKNEL 183
>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
Length = 306
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 148 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 279
+G + + F+P+ L F T+ D FY NR +G IN++
Sbjct: 1 MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44
>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
Length = 688
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 540 DLDNGISGNIGLNVDGN 490
++D G+SGN LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413
>SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7)
Length = 536
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 149 RSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNEL 184
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 27.9 bits (59), Expect = 7.7
Identities = 27/104 (25%), Positives = 40/104 (38%)
Frame = +1
Query: 268 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 447
+ F+ L PYP ++HF VV + + D TNS F ++ P +
Sbjct: 623 LTEFQTNLVPYP--RIHFPMASYAPVVSAEKAYHEQLTVADITNSCFEPANQMVKCDPRH 680
Query: 448 FKVRXPRLKHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGFPI 579
K L ++ V DV S IAT K + GF +
Sbjct: 681 GKYMACCLLYRGDVVPKDVNSAIATIKTKKTIQFVDWCPTGFKV 724
>SB_7188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1094
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 492 RSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNEL 527
>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 149 RSLLERNGQRLTASAHLGQYISIVLKQEVERIKNEL 184
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 1362 RSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNEL 1397
>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 149 RSLLERNGQRLTASAHLGQYISIVLKQEVERIKNEL 184
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 313 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 405
LH G K++D VVE + F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210
>SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 17 RKLISTMKRQLTLSETIGQRTPICMKKKLQRIINDL 124
R L+ ++LT S +GQ I +K++++RI N+L
Sbjct: 148 RSLLEKNGQRLTASAHLGQYISIVLKQEVERIKNEL 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,102
Number of Sequences: 59808
Number of extensions: 390377
Number of successful extensions: 1042
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -