Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C08
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    36   0.004
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   5.9  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   IDNPDYKGVWAPKQIDNPAYKGPW 73
           I NP+Y+G W+P  I NP + G W
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEW 363



 Score = 31.9 bits (69), Expect = 0.052
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  GVWAPKQIDNPAYKGPWIHP 82
           G W P  I NP Y+GPW  P
Sbjct: 333 GEWKPPMIRNPNYRGPWSPP 352



 Score = 29.1 bits (62), Expect = 0.37
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   IDNPDYKGVWAPKQIDNPAY 61
           I NP++ G W P++I NP Y
Sbjct: 354 IPNPEFIGEWYPRKIPNPDY 373


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 220 LAKEKGEIIKKMQEGEKKMK 279
           L  E GEI+K++ + EKK+K
Sbjct: 206 LLDENGEILKRLVKKEKKLK 225


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 55  CIQGTMDPPW-RLTTREYTPDSNLYKRDEICSVG 153
           C+ GT      RL TRE++ D+N     ++  +G
Sbjct: 96  CVYGTSPQQLDRLITREFSSDANFQNNHQVFLIG 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,276
Number of Sequences: 5004
Number of extensions: 25751
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)