Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C08
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 36 0.023
SB_19581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_2404| Best HMM Match : L1L_F9_C19 (HMM E-Value=1.9) 29 2.6
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06) 28 3.4
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +1
Query: 100 EYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKE-KGEIIKKMQEGEKKM 276
EY D LY +I ++G DLWQVKSGTIF+N L TD A++ E K +EGEKKM
Sbjct: 981 EYKADDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKKM 1040
Query: 277 K 279
K
Sbjct: 1041 K 1041
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +2
Query: 2 IDNPDYKGVWAPKQIDNPAYKGPWIHP 82
IDNP+YKG W PKQIDNP YKG W+HP
Sbjct: 949 IDNPEYKGEWKPKQIDNPNYKGEWVHP 975
Score = 37.9 bits (84), Expect = 0.004
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 2 IDNPDYKGVWAPKQIDNPAYK 64
IDNP+YKG W +IDNP YK
Sbjct: 963 IDNPNYKGEWVHPEIDNPEYK 983
Score = 32.3 bits (70), Expect = 0.21
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 23 GVWAPKQIDNPAYKGPW 73
G W P IDNP YKG W
Sbjct: 942 GEWEPPMIDNPEYKGEW 958
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 35.5 bits (78), Expect = 0.023
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 5 DNPDYKGVWAPKQIDNPAYK 64
DNP+YKG W+ IDNP YK
Sbjct: 230 DNPEYKGKWSAPLIDNPNYK 249
Score = 31.5 bits (68), Expect = 0.37
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 23 GVWAPKQIDNPAYKGPWIHP 82
G W P DNP YKG W P
Sbjct: 222 GEWKPPMADNPEYKGKWSAP 241
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 148 VGLDLWQVKSGTIFNNFLFTDDPALA 225
VGL+LW + S +F+N + T+D A+A
Sbjct: 252 VGLELWSMTSDILFDNVIVTNDKAVA 277
>SB_19581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 31.5 bits (68), Expect = 0.37
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 76 PPWRLTTREYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDP---ALAKEK 234
PPW LT PD+ L+K D + DL + +GT N DP A+ +EK
Sbjct: 3 PPWFLTPPRPYPDARLFKTDGLSKTDSDLDKQVTGTPLANSDGDRDPGDGAIEEEK 58
>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 104 TLQTRTCTSVMRYALSVSTYGRSSLEPSLI 193
TL R +MR ALS+S+ RS+LEP ++
Sbjct: 690 TLTRRFAEDLMRKALSLSSTSRSTLEPRVL 719
>SB_2404| Best HMM Match : L1L_F9_C19 (HMM E-Value=1.9)
Length = 231
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 6 TTPTTRASGHLNRLTTLHTRDHGSTLEIDNP*IHSRLE 119
TTPTT L ++++HTR +T+E D+ H+RL+
Sbjct: 84 TTPTTNLD--LASISSIHTRAALTTIESDDQQSHTRLD 119
>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
Length = 1532
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 118 NLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 240
+L ++ EIC L + K +F F F DPAL + G+
Sbjct: 634 HLLEQLEICQKSLSGYLEKKRLLFPRFFFVSDPALLEILGQ 674
>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 169 PAISRDRQSISHHACTGSSLECIHGLSISRVDPWSLVCRVVNLFR 35
PA++R +I A T +E H L ++PWS V ++ N R
Sbjct: 494 PALARVEGTILS-ALTEKKVETFHSLLRRNIEPWSNVAQIQNAAR 537
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 118 NLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 240
+L ++ E+C L + K +F F F DPAL + G+
Sbjct: 1670 HLLEQLELCQKSLTGYLEKKRLVFPRFFFVSDPALLEILGQ 1710
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 7 QPRL-QGRLGT*TD*QPCIQGTMDPPWRLTTRE 102
QPR+ QG+L D PC +G++ PP + R+
Sbjct: 1834 QPRIEQGKLQLWVDIFPCTEGSIKPPIEIEPRK 1866
>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2141
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 475 THTHMLSSTRRYTYC-LDTRTHKHFT 401
TH H+ S T + + + TRTHKH T
Sbjct: 428 THKHLTSGTWTHKHLTIVTRTHKHLT 453
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 475 THTHMLSSTRRYTYC-LDTRTHKHFT 401
TH H+ TR + + + TRTHKH T
Sbjct: 438 THKHLTIVTRTHKHLTIVTRTHKHLT 463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,289
Number of Sequences: 59808
Number of extensions: 222932
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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