Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C07
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   7.1  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   9.4  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +1

Query: 181 DFAYGESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYT 360
           D  Y + SE D ++ +   +G++ SL       IDGL    +    DL        N Y 
Sbjct: 45  DPKYAKLSEQDVQVFK-SIIGKDGSL-------IDGLDKSTDPA--DLDAFNIDWMNKYR 94

Query: 361 NEVDVYLPKFKCETTTNLKEVLQAMNVKKL 450
            +  + L   K +TT  + E+L+  N KKL
Sbjct: 95  GKTQLAL---KPKTTQQVSEILKYCNQKKL 121


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 226 ELPYVGEESSLLVVLPNKIDGLHALEEKLKKD 321
           EL Y G++  +  +LPN ++    LEE+ K +
Sbjct: 376 ELLYPGKDEDIDTILPNVLEYYRHLEEEEKDE 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,061
Number of Sequences: 5004
Number of extensions: 43434
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)