Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C07
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                     148   3e-36
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                     122   3e-28
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                     113   2e-25
SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)                      29   3.3  
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                28   7.5  
SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)                      27   9.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score =  148 bits (359), Expect = 3e-36
 Identities = 80/201 (39%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
 Frame = +1

Query: 1   RIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRG 180
           +IKNL+     +  T   LVNA+YFKGSW   F++  TQ   F     + IQV  MY+  
Sbjct: 144 KIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSS 203

Query: 181 DFAYGESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKD-LSVLERAQQNMY 357
           +F Y ESS L  +++ELPY GE+ S++V+LPN++DGL  LE  L K+ L     + +N +
Sbjct: 204 EFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSH 263

Query: 358 TNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFEPGQARLDHLLKNGGDLYVSEAVQKAFI 537
             EV+V LPKF      +L E L+ M    LF PG+A L  +  +   L VSE V KAF+
Sbjct: 264 PEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGI--SAAPLVVSEVVHKAFV 321

Query: 538 EVXXXXXXXXXXXXFGITYLS 600
           EV             GI  +S
Sbjct: 322 EVNEEGTIAAAATGVGIMLMS 342


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score =  122 bits (293), Expect = 3e-28
 Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 1/209 (0%)
 Frame = +1

Query: 1   RIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRG 180
           +I +L+ P   +  T+  LVNAIYFKG W   F KE +    F       ++V  M+++ 
Sbjct: 107 KICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKS 166

Query: 181 DFAYGESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKD-LSVLERAQQNMY 357
            F Y  S +   KL+ELPYV  + S+++VLP++ +GL   E+ L  D ++ +  +  +  
Sbjct: 167 KFKYLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQR 226

Query: 358 TNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFEPGQARLDHLLKNGGDLYVSEAVQKAFI 537
             +V+VY+PKFK  +   L E LQ + +KK+F+   A    +      L+VS  + KAF+
Sbjct: 227 PADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFV 286

Query: 538 EVXXXXXXXXXXXXFGITYLSAFISEPXI 624
           EV              +    A + EP +
Sbjct: 287 EVNEEGTEAAAATAAIMMMRCAIMREPLV 315


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score =  113 bits (271), Expect = 2e-25
 Identities = 58/182 (31%), Positives = 109/182 (59%), Gaps = 2/182 (1%)
 Frame = +1

Query: 4   IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHV--NKDKTIQVPTMYKR 177
           IK L+    ++S T+ ++VNA+YFKG WK +F +E T    F V  + +  I+V  M ++
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172

Query: 178 GDFAYGESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMY 357
               +   +++  +++ELPY G++++++++LP +  G+ +LE+ +  D+ ++E+ ++ M 
Sbjct: 173 MKVNFYYDADIKCRVVELPYSGDDTAMVIILPEEPSGIFSLEKSI--DVEIMEKWRRLMI 230

Query: 358 TNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFEPGQARLDHLLKNGGDLYVSEAVQKAFI 537
              V+V +PKF+      L+ +LQ + V  +F+  +A L  +    G LYVS A+ KA I
Sbjct: 231 NTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKG-LYVSSAIHKAHI 289

Query: 538 EV 543
           EV
Sbjct: 290 EV 291


>SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)
          Length = 417

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 262 VVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDV 375
           +++  KI+    LEEKLK+ ++ LE+ ++ +  NE  V
Sbjct: 114 ILVTKKIEEYSQLEEKLKQSMADLEKRERLLSDNEAKV 151


>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 132 MEWTVLCQFLIKFVFPTSLK--VNCIYENTLC 43
           M++     +L   VFPT  K  V CIYEN  C
Sbjct: 405 MKYVYTQSWLFTLVFPTQQKRVVQCIYENESC 436


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 14  WWIL---VRWTVAHSVFS*MQFTLREVGKTN 97
           WW++   VRW + H      +  LR+VGK N
Sbjct: 224 WWLIPESVRWLLTHERSKEAEMILRKVGKFN 254


>SB_37009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 301 EEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTTNLKE--VLQAMNVKKLFE 456
           E+ + KDL  L +   N  +  V V +P   CE T N  E  V +A   +KL E
Sbjct: 410 EDTISKDLKYLHKLALNAGSMTVAVTIPGRLCELTPNCSEHKVARAQINEKLRE 463


>SB_6213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 301 EEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCETTT 408
           E K   +L +    +Q   T +  VY+P F+C++ T
Sbjct: 81  ESKFDDNLMITTPIRQTPRTEDSSVYVPSFQCKSPT 116


>SB_39029| Best HMM Match : ig (HMM E-Value=6e-10)
          Length = 439

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 394 CETTTNLKEVLQAMNVKKLFEPGQARLDHLL-KNGGDLYVS 513
           C+ T++ K  +  +++K    P   R+ H+L  NGGD + +
Sbjct: 125 CQITSSKKPFVSWIHIKNFTTPSFPRVRHILTNNGGDKWTT 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,280
Number of Sequences: 59808
Number of extensions: 305703
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)