Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C07
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi... 94 6e-20
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 83 2e-16
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 75 4e-14
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi... 73 2e-13
At2g14540.1 68415.m01628 serpin family protein / serine protease... 72 3e-13
At1g64030.1 68414.m07252 serpin family protein / serine protease... 66 1e-11
At1g51330.1 68414.m05772 serpin-related / serine protease inhibi... 59 3e-09
At1g62170.1 68414.m07013 serpin family protein / serine protease... 58 7e-09
At2g35580.1 68415.m04357 serpin family protein / serine protease... 52 3e-07
At1g63280.1 68414.m07154 serpin-related / serine protease inhibi... 51 8e-07
At1g64010.1 68414.m07250 serpin, putative / serine protease inhi... 37 0.013
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 29 2.7
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta... 29 2.7
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 29 3.5
At3g28300.1 68416.m03535 integrin-related protein 14a identical ... 29 3.5
At3g28290.1 68416.m03533 integrin-related protein 14a identical ... 29 3.5
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta... 29 3.5
At1g78730.1 68414.m09176 F-box family protein contains F-box dom... 28 6.1
At1g24310.1 68414.m03067 expressed protein 27 8.1
>At2g25240.1 68415.m03020 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 324
Score = 94.3 bits (224), Expect = 6e-20
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Frame = +1
Query: 4 IKNLVDPSSLDS--STQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKR 177
IK ++ S+D+ S+ VL NA+YFKG+W KFD +T+ FH+ +++VP M
Sbjct: 85 IKQILSRDSIDTIRSSTLVLANAVYFKGAWSSKFDANMTKKNDFHLLDGTSVKVPFMTNY 144
Query: 178 GDFAYGESSELDAKLIELPYVGEES--SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQN 351
D Y S + K++ LPY+ ++ S+ + LPN +GL L EK+ + S +
Sbjct: 145 ED-QYLRSYD-GFKVLRLPYIEDQRQFSMYIYLPNDKEGLAPLLEKIGSEPSFFDN-HIP 201
Query: 352 MYTNEVDVY-LPKFKCETTTNLKEVLQAMNVKKLFEPGQARLDHL--LKNGGDLYVSEAV 522
++ V + +PKFK N EVL+ M + F G + + NG DLYVS +
Sbjct: 202 LHCISVGAFRIPKFKFSFEFNASEVLKDMGLTSPFNNGGGLTEMVDSPSNGDDLYVSSIL 261
Query: 523 QKAFIEV 543
KA IEV
Sbjct: 262 HKACIEV 268
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 82.6 bits (195), Expect = 2e-16
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Frame = +1
Query: 52 VLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRGDFAYGESSELDAKLIEL 231
+L NA+YFK +W KFD +LT+D FH+ T++VP M D Y + +++ L
Sbjct: 168 ILANAVYFKAAWSRKFDAKLTKDNDFHLLDGNTVKVPFMMSYKD-QYLRGYD-GFQVLRL 225
Query: 232 PYVGEES--SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVD-VYLPKFKCET 402
PYV ++ S+ + LPN DGL AL EK+ + L+ + ++ VD + +PK
Sbjct: 226 PYVEDKRHFSMYIYLPNDKDGLAALLEKISTEPGFLD-SHIPLHRTPVDALRIPKLNFSF 284
Query: 403 TTNLKEVLQAMNVKKLFEPGQARLDHLL---KNGGDLYVSEAVQKAFIEV 543
EVL+ M + F + L ++ NG L+VS + KA IEV
Sbjct: 285 EFKASEVLKDMGLTSPF-TSKGNLTEMVDSPSNGDKLHVSSIIHKACIEV 333
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 74.9 bits (176), Expect = 4e-14
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTM-YKRG 180
I ++ S DS T+ + NA+YFKG+W +KFD+ LTQ+ FH+ + P M K+
Sbjct: 150 ITEVLPEGSADSMTKLIFANALYFKGTWNEKFDESLTQEGEFHLLDGNKVTAPFMTSKKK 209
Query: 181 DFAYGESSELDAKLIELPYV-GEES---SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQ 348
+ S+ K++ LPY+ G++ S+ LP+ +GL L +K+ L+
Sbjct: 210 QYV---SAYDGFKVLGLPYLQGQDKRQFSMYFYLPDANNGLSDLLDKIVSTPGFLDNHIP 266
Query: 349 NMYTNEVDVYLPKFKCETTTNLKEVLQAMNVKKLF--EPGQARLDHLLKNGGDLYVSEAV 522
+ +PKFK + VL+ + + F E G + + G +L VS
Sbjct: 267 RRQVKVREFKIPKFKFSFGFDASNVLKGLGLTSPFSGEEGLTEMVESPEMGKNLCVSNIF 326
Query: 523 QKAFIEV 543
KA IEV
Sbjct: 327 HKACIEV 333
>At3g45220.1 68416.m04880 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 393
Score = 72.9 bits (171), Expect = 2e-13
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Frame = +1
Query: 4 IKNLVDPSSLDS--STQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVP--TMY 171
IK ++ S+ + + +L NA+YFKG+W KFD +LT+ FH+ ++VP T Y
Sbjct: 150 IKEILSDDSIKTIRESMLILANAVYFKGAWSKKFDAKLTKSYDFHLLDGTMVKVPFMTNY 209
Query: 172 KRGDFAYGESSELDAKLIELPYVGEES--SLLVVLPNKIDGLHALEEKLKKDLSVLER-- 339
K+ Y + K++ LPYV ++ ++ + LPN DGL L E++ L+
Sbjct: 210 KKQYLEYYDG----FKVLRLPYVEDQRQFAMYIYLPNDRDGLPTLLEEISSKPRFLDNHI 265
Query: 340 AQQNMYTNEVDVYLPKFKCETTTNLKEVLQAMNVKKLFEPG-------QARLDHLLKNGG 498
+Q + T + PKFK +VL+ M + F G + L
Sbjct: 266 PRQRILTEAFKI--PKFKFSFEFKASDVLKEMGLTLPFTHGSLTEMVESPSIPENLCVAE 323
Query: 499 DLYVSEAVQKAFIEV 543
+L+VS KA IEV
Sbjct: 324 NLFVSNVFHKACIEV 338
>At2g14540.1 68415.m01628 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 407
Score = 72.1 bits (169), Expect = 3e-13
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRGD 183
IK ++ S+ S T + NA+YFKG+W+ FDK +T+D+PFH+ K++ VP M + +
Sbjct: 179 IKEILPRGSVTSLTNWIYGNALYFKGAWEKAFDKSMTRDKPFHLLNGKSVSVPFM-RSYE 237
Query: 184 FAYGESSELDAKLIELPY------VGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQ 345
+ E+ + K++ LPY E S+ + LP+K L L E++ + L+
Sbjct: 238 KQFIEAYD-GFKVLRLPYRQGRDDTNREFSMYLYLPDKKGELDNLLERITSNPGFLDSHI 296
Query: 346 QNMYTNEVDVYLPKFKCE 399
+ D +PKFK E
Sbjct: 297 PEYRVDVGDFRIPKFKIE 314
>At1g64030.1 68414.m07252 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
[Cucurbita maxima] GI:9937311, serpin [Triticum
aestivum] GI:871551; contains Pfam profile PF00079:
Serpin (serine protease inhibitor)
Length = 385
Score = 66.5 bits (155), Expect = 1e-11
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRGD 183
IK+L+ S+ S T + NA+ FKG+WK F+K T+D F++ ++ VP M +
Sbjct: 151 IKDLLPDGSVTSLTNKIYANALSFKGAWKRPFEKYYTRDNDFYLVNGTSVSVPFM-SSYE 209
Query: 184 FAYGESSELDAKLIELPY------VGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQ 345
Y + + K++ LPY + S+ LP+K DGL L EK+ L+ +
Sbjct: 210 NQYVRAYD-GFKVLRLPYQRGSDDTNRKFSMYFYLPDKKDGLDDLLEKMASTPGFLD-SH 267
Query: 346 QNMYTNEVDVY-LPKFKCETTTNLKEVLQAMNVKKL 450
Y +E++ + +PKFK E ++ VL + ++ +
Sbjct: 268 IPTYRDELEKFRIPKFKIEFGFSVTSVLDRLGLRSM 303
>At1g51330.1 68414.m05772 serpin-related / serine protease
inhibitor-related similar to serpin [Hordeum vulgare
subsp. vulgare] CAA64599.1 GI:1197577
Length = 193
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTM 168
IKNL+ P S+ + T + NA+YFKG+W++KF K +T +PFH+ K + VP M
Sbjct: 51 IKNLLPPGSVTNQTIKIYGNALYFKGAWENKFGKSMTIHKPFHLVNGKQVLVPFM 105
>At1g62170.1 68414.m07013 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
GI:9937311 from [Cucurbita maxima]; contains Pfam
profile PF00079: Serpin (serine protease inhibitor)
Length = 433
Score = 57.6 bits (133), Expect = 7e-09
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRGD 183
IK+L+ S+ S T V +A+YFKG+W++K+ K +T+ +PF++ ++ VP M
Sbjct: 215 IKDLLPRGSVTSLTDRVYGSALYFKGTWEEKYSKSMTKCKPFYLLNGTSVSVPFM---SS 271
Query: 184 FAYGESSELDA-KLIELPY------VGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERA 342
F + D K++ LPY ++ + LP+K L L E++ L+
Sbjct: 272 FEKQYIAAYDGFKVLRLPYRQGRDNTNRNFAMYIYLPDKKGELDDLLERMTSTPGFLDSH 331
Query: 343 QQNMYTNEVDVYLPKFKCE 399
+PKFK E
Sbjct: 332 NPERRVKVGKFRIPKFKIE 350
>At2g35580.1 68415.m04357 serpin family protein / serine protease
inhibitor family protein similar to protein zx [Hordeum
vulgare subsp. vulgare] GI:19071, serpin [Triticum
aestivum] GI:1885350; contains Pfam profile PF00079:
Serpin (serine protease inhibitor)
Length = 374
Score = 52.0 bits (119), Expect = 3e-07
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Frame = +1
Query: 4 IKNLVDPSSLDSS--TQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKR 177
I NL+ PS+ S+ T + NA++F G W +FD LT+D FH+ ++VP M
Sbjct: 150 ITNLL-PSNPKSAPLTDHIFANALFFNGRWDSQFDPSLTKDSDFHLLDGTKVRVPFM-TG 207
Query: 178 GDFAYGESSELDAKLIELPY-VGEES----SLLVVLPNKIDGLHALEEKLKKDLSVLERA 342
Y E K+I L Y G E S+ + LP++ DGL ++ E+L L+
Sbjct: 208 ASCRYTHVYE-GFKVINLQYRRGREDSRSFSMQIYLPDEKDGLPSMLERLASTRGFLKDN 266
Query: 343 QQNMYTNEV--DVYLPKFKCETTTNLKEVLQAMNV 441
+ + V ++ +P+FK + E L+ +
Sbjct: 267 EVLPSHSAVIKELKIPRFKFDFAFEASEALKGFGL 301
>At1g63280.1 68414.m07154 serpin-related / serine protease
inhibitor-related similar to protein zx [Hordeum vulgare
subsp. vulgare] GI:19071, serpin [Triticum aestivum]
GI:1885346
Length = 120
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +1
Query: 4 IKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTM 168
I +L+ S+ S T V NA+YFKG+W++KFDK T+D FH K+ + VP M
Sbjct: 28 IIDLLPRGSVKSETVQVYGNALYFKGAWENKFDKSSTKDNEFHQGKE--VHVPFM 80
>At1g64010.1 68414.m07250 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 185
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +1
Query: 109 LTQDRPFHVNKDKTIQVPTMYKRGDFAYGESSELDAKLIELPY-----VGEESSLLVVLP 273
+T+DR FH+ ++ V M D Y E+ + K+++LP+ S+ LP
Sbjct: 1 MTKDRDFHLINGTSVSVSLMSSYKD-QYIEAYD-GFKVLKLPFRQGNDTSRNFSMHFYLP 58
Query: 274 NKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVYLPKFKCE 399
++ DGL L EK+ + L+ + + +PKFK E
Sbjct: 59 DEKDGLDNLVEKMASSVGFLDSHIPSQKVKVGEFGIPKFKIE 100
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 76 KGSWKDKFDKELTQDRPFHVN-KDKTIQVPTMYK 174
K SWK++ D+E + + H N K KT++ ++K
Sbjct: 212 KSSWKERTDQEAAERQKHHSNKKQKTVKKSILHK 245
>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1077
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 253 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYT-NEVDVYLPKFKCETTTNLKEVLQ 429
SL+V NKI H L+K L +LE+ QQ YT NE + + E+L+
Sbjct: 775 SLIVWRWNKISKSHFYLGNLEKALDILEKLQQVEYTCNENQEECRESPASLVATISELLR 834
Query: 430 AMNVKKLF 453
N F
Sbjct: 835 YKNAAICF 842
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 106 ELTQDRPFHVNKDKTIQVPTMYKRGDFAYGESSELDAKLIELPYVGEES--SLLVVLPNK 279
E +D HV ++ I++ + ++ D GE SEL+ ++ L E S + L +K
Sbjct: 243 EKIRDNSIHVVEEMKIKMTGIDEQTDKTQGEISELEKQIKALTQAREASMGGEVKALSDK 302
Query: 280 IDGLHALEEKLKKDLSVLERAQQNMYTNE 366
+D +L ++ ++LS L + + E
Sbjct: 303 VD---SLSNEVTRELSKLTNMEDTLQGEE 328
>At3g28300.1 68416.m03535 integrin-related protein 14a identical to
integrin-related At14a protein GI:11994573 [Arabidopsis
thaliana]
Length = 385
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 193 GESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVD 372
G + L LI + +VG + +L NKI EE LKK + + M T++VD
Sbjct: 247 GVAGLLSLPLIAIGWVGVHT----ILENKIQAREKQEEALKKAHRIANEMDKGMETDKVD 302
Query: 373 V 375
+
Sbjct: 303 M 303
>At3g28290.1 68416.m03533 integrin-related protein 14a identical to
At14a protein GI:11994573 [Arabidopsis thaliana] [Gene
230 (1), 33-40 (1999)], At14a protein [Arabidopsis
thaliana] GI:4589123
Length = 385
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 193 GESSELDAKLIELPYVGEESSLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVD 372
G + L LI + +VG + +L NKI EE LKK + + M T++VD
Sbjct: 247 GVAGLLSLPLIAIGWVGVHT----ILENKIQAREKQEEALKKAHRIANEMDKGMETDKVD 302
Query: 373 V 375
+
Sbjct: 303 M 303
>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1108
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 253 SLLVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYT-NEVDVYLPKFKCETTTNLKEVLQ 429
SL+V NKI H L+K L +LE+ QQ YT NE + + E+L+
Sbjct: 775 SLIVWRWNKISKSHFYLGNLEKALDILEKLQQVEYTCNENQEECRESPASLVATISELLR 834
Query: 430 AMN 438
N
Sbjct: 835 YKN 837
>At1g78730.1 68414.m09176 F-box family protein contains F-box domain
Pfam:PF00646
Length = 420
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +1
Query: 19 DPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQDRPFHVNKDKTIQVPTMYKRGDFAYGE 198
+P S+ QC L A+ F K +KE + + TI + GDF E
Sbjct: 339 EPISILPGPQCNLP-ALEFVDILKPMVEKETELKLMSYFLEKSTILKKLTLRLGDFRGNE 397
Query: 199 SSELDAKLIELPYVGEESSLLVV 267
S L KL+ +P + ++V+
Sbjct: 398 ESALLKKLLTIPRLSSSCQVVVL 420
>At1g24310.1 68414.m03067 expressed protein
Length = 377
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +1
Query: 208 LDAKLIELPYVGEESSL---LVVLPNKIDGLHALEEKLKKDLSVLERAQQNMYTNEVDVY 378
L+ K LP E+ L L + ++ G A + + L + RAQ N +Y
Sbjct: 264 LEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIAAGSSLY 323
Query: 379 LP---KFKCETTTNLKEVLQ 429
LP K ++ +++EVLQ
Sbjct: 324 LPGSTKIDEQSLIDMQEVLQ 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,731
Number of Sequences: 28952
Number of extensions: 217290
Number of successful extensions: 562
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -