Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C04
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0655 + 30668706-30668849,30669043-30669471                       28   5.8  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    27   7.7  

>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 157 RDGIDAVRGGESDRLG*SSDCGKPT-NCARLRVPPHSGTPSR*RR 288
           ++ I   + G   RLG  S C  P    A    PPH+ TPS  RR
Sbjct: 47  KEVIKTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRR 91


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 303 QNNVDSNSLTLPMTWFPGLADLKNELQSWDWCYGKTPIFTVSRTFPVPAEILAPSKVYSA 482
           Q N+DS  + +  T    L D+  E+ +WD   G +P + V+    VP     P KV   
Sbjct: 737 QLNLDSYFIEVVNTTADELRDVAVEISAWD-LDGASPYYRVTEKIAVP-----PKKVQQV 790

Query: 483 TQ 488
           T+
Sbjct: 791 TE 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349,405
Number of Sequences: 37544
Number of extensions: 319472
Number of successful extensions: 825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)