Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_C04
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_2285| Best HMM Match : IncA (HMM E-Value=3.2) 31 0.48
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 31 0.64
SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44) 30 1.1
SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5) 28 4.5
SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025) 28 4.5
SB_5649| Best HMM Match : DUF1212 (HMM E-Value=2.6) 28 4.5
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11) 27 7.9
SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_1332| Best HMM Match : FeoB_N (HMM E-Value=0.94) 27 7.9
>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 34.7 bits (76), Expect = 0.052
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 110 DLSKALAKREHGIQTHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGG 289
D +++ K ++THA S S+ A E T+LG ++LR +LD+
Sbjct: 35 DDEESIPKTSTSLRTHAAHSMASQTAGTASAVTSFITEGAATSLGLQFLREEYPNLDENL 94
Query: 290 QNLISKQRG 316
S QRG
Sbjct: 95 IRFQSDQRG 103
>SB_2285| Best HMM Match : IncA (HMM E-Value=3.2)
Length = 293
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 149 QTHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRG 316
+THA T S+ + E T LG ++LR +LD+ S QRG
Sbjct: 48 RTHAAHKTASQTTGTASAETSFITEGAATRLGLQFLREEYPNLDENLIQFQSDQRG 103
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 149 QTHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRG 316
+THA T S+ A T + E T LG ++LR +L++ S +RG
Sbjct: 48 RTHAAHRTASQTAGTTSAETSFITEGAATRLGLQFLREEYPNLNENLIRFQSDRRG 103
>SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44)
Length = 212
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 68 GYHHCTLLVNANKADLSKALAKREHGIQTHATASTRSEVANLTDLDNRVTVESLQ 232
G H C L+ N + + L H + + VAN DLD +VT ES++
Sbjct: 83 GAHACILMFNVDDPGSLQYLLHWIHDTDEFCPDALKVLVANKIDLDEQVTTESVE 137
>SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 149 QTHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRGFQFV 328
+THA S + A + V E +T LG + LR LD+ S +RG + +
Sbjct: 48 RTHAAHSMALQTAGTASAETSVITEGAETRLGLQSLREEYPDLDENLIRFQSDRRGKKLI 107
>SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/93 (24%), Positives = 38/93 (40%)
Frame = +2
Query: 38 GTAAKLGHLTGYHHCTLLVNANKADLSKALAKREHGIQTHATASTRSEVANLTDLDNRVT 217
GT+A G G T L+ + D +++ +THA T S+ +
Sbjct: 14 GTSADRG--VGDDETTPLIPLDPDD-GESIPMTSTSSRTHAAHRTASQTTGTASAETSFI 70
Query: 218 VESLQTALGYEYLRTPALHLDDGGQNLISKQRG 316
E +T LG ++LR +L + S +RG
Sbjct: 71 TEGAETRLGLQFLREKYPNLRESLLQFQSDRRG 103
>SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5)
Length = 994
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 206 YPSRSDSPPRTASMPSRESVCHAH 135
YPS+ DS P P ++ CH H
Sbjct: 153 YPSQRDSQPGAGKRPCSDAGCHRH 176
>SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025)
Length = 358
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 173 RSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRGFQFVNPTDDLVP 352
+ + L + +ESL + YLRTP H+ L +K+R F + T L+P
Sbjct: 58 KKTIFELIQTEVEEAIESLSQMVARPYLRTPRSHIIQATSLLANKRRTF-LLALTRGLIP 116
>SB_5649| Best HMM Match : DUF1212 (HMM E-Value=2.6)
Length = 293
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +2
Query: 110 DLSKALAKREHGIQTHATASTRSEVANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGG 289
D K++ +THA T S+ + E T LG ++LR +L +
Sbjct: 35 DDGKSIPMTSTSSRTHAAHRTASQTTGTASAETSFITEGAATRLGLQFLREEYPNLKESL 94
Query: 290 QNLISKQRG 316
S +RG
Sbjct: 95 LRFQSDRRG 103
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 53 LGHLTGYHHCTLLVNANKADLSKALAKREHGIQTHATASTRSE 181
LGH CT L ++D + REH I+ H E
Sbjct: 7 LGHQANRAQCTTLQRRGQSDSQQLNKTREHTIRVHTVTRVSDE 49
>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 206 YPSRSDSPPRTASMPSRESVCHAHVLQVP 120
YP++ DS P P ++ CH H + P
Sbjct: 242 YPTQRDSQPGAGKRPCSDAGCHRHSMVHP 270
>SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 206 YPSRSDSPPRTASMPSRESVCHAHVLQVP 120
YP++ D P P ++ CH H +++P
Sbjct: 260 YPTQRDPYPGARKRPCSDAGCHRHSMELP 288
>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
Length = 230
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 269 VPECGGTRSLAQFVGFPQSLD 207
+P GGT+ L + VG P SLD
Sbjct: 48 LPGAGGTQRLPRLVGLPDSLD 68
>SB_47682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 260 CGGTRSLAQFVGFPQSLDYPSRSDSPPRTASMPSRESVCHAHVLQVPC 117
CGG A G L P +PP + P +++ C A +Q PC
Sbjct: 46 CGGAPMQAPCAGQQMPLA-PLMPLAPPMPLAPPVQQAPCGAGTMQAPC 92
>SB_1332| Best HMM Match : FeoB_N (HMM E-Value=0.94)
Length = 348
Score = 27.5 bits (58), Expect = 7.9
Identities = 25/104 (24%), Positives = 40/104 (38%)
Frame = +2
Query: 5 DIIVRDKYKVSGTAAKLGHLTGYHHCTLLVNANKADLSKALAKREHGIQTHATASTRSEV 184
D+ V V G +A G G T L+ + D +++ + HA S S
Sbjct: 3 DVDVNIDDTVPGASADRG--AGDDETTPLIPFDPDD-GESIPMTSTSSRMHAAHSMASRT 59
Query: 185 ANLTDLDNRVTVESLQTALGYEYLRTPALHLDDGGQNLISKQRG 316
A + E T LG ++LR +L++ S +RG
Sbjct: 60 AGTASAETSFNTEGAATRLGLQFLREEYPNLNENMLRFQSDRRG 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,673,883
Number of Sequences: 59808
Number of extensions: 369102
Number of successful extensions: 869
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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