Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_C04
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02940.1 68414.m00261 glutathione S-transferase, putative sim...    31   0.69 
At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapien...    30   1.2  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    28   3.7  

>At1g02940.1 68414.m00261 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]
          Length = 256

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 545 LRVTSVNETLFHGHSNNQFLSGRVDF*WCKYLGRNRKRSAHG 420
           +  + V ET +H H N  F S R  F WC+ L R  +   +G
Sbjct: 3   INASHVPETCYH-HCNQTFESSRQCFKWCQELARKDEYKIYG 43


>At5g58510.1 68418.m07327 expressed protein KIAA0066, Homo sapiens,
           EMBL:HSORFKG1O
          Length = 963

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 402 RNTSPSFATHFLNQLDLGTKSSVGLTNWNPRCFEIRFC 289
           +N + S+   F  Q+D       G+ NWN    +++ C
Sbjct: 76  KNVAKSYCMEFYFQIDNNGSQQAGIGNWNSNSHDLQLC 113


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
            musculus [SP|P70704]; contains InterPro accession
            IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1240

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 399  YGKTPIFTVSRTFPVPAEILAPSKVYSATQELVITMT 509
            YG  P+      F +  EILAP+ ++  T  LVI  T
Sbjct: 1112 YGMLPVKLSGNIFHMLVEILAPAPIFWLTSLLVIAAT 1148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,831
Number of Sequences: 28952
Number of extensions: 246401
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)